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	<title>Sciencebase Science Blog &#187; Bird Flu</title>
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	<link>http://www.sciencebase.com/science-blog</link>
	<description>Science Blog from Freelance Science Writer David Bradley</description>
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		<title>Alchemist Checks Oxy Cholesterol Levels</title>
		<link>http://www.sciencebase.com/science-blog/alchemist-checks-oxy-cholesterol-levels.html</link>
		<comments>http://www.sciencebase.com/science-blog/alchemist-checks-oxy-cholesterol-levels.html#comments</comments>
		<pubDate>Tue, 01 Sep 2009 12:00:43 +0000</pubDate>
		<dc:creator>David Bradley</dc:creator>
				<category><![CDATA[Bird Flu]]></category>
		<category><![CDATA[Environment]]></category>
		<category><![CDATA[Geek]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[alchemist]]></category>
		<category><![CDATA[chemistry]]></category>
		<category><![CDATA[cholesterol]]></category>

		<guid isPermaLink="false">http://www.sciencebase.com/science-blog/?p=4397</guid>
		<description><![CDATA[The Alchemist this week learns how fluorine chemistry is blooming, how to melt proteins, and how cholesterol is all about the good, the bad, and the oxy. Also this week, a technique borrowed from organic LED fabrication could lead to a new way to manufacture tiny inorganic LEDs for next generation displays, while a conductive [...]<p><a href="http://www.sciencebase.com/science-blog/alchemist-checks-oxy-cholesterol-levels.html">Alchemist Checks Oxy Cholesterol Levels</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
]]></description>
			<content:encoded><![CDATA[<p><img style="float: left; width: 120px; padding-right: 4px; padding-top: 5px;" src="../images/copper-alchemist.jpg" alt="copper-alchemist"><a href="http://www.chemweb.com/content/alchemist/alchemist_20090826.html">The Alchemist</a> this week learns how fluorine chemistry is blooming, how to melt proteins, and how cholesterol is all about the good, the bad, and the oxy. Also this week, a technique borrowed from organic LED fabrication could lead to a new way to manufacture tiny inorganic LEDs for next generation displays, while a conductive flip has been observed with clusters of atoms close to absolute zero. Finally, the American Chemical Society announces this years previously unsung chemical heroes from across the industry.</p>
<p>Previously on <a href="http://www.chemweb.com/content/alchemist/alchemist_20090811.html">ChemWeb</a>, we heard rumors of silicon neurons and the coming cyborg age, he discovers that a compound that leads to ovine Cyclops has now been synthesized for cancer drug research, and how chicken poop down on the shooting range could help solve the problem of lead in the soil. Also, in the news, a new type of fuel cell for truckers that reduces their emissions during rest periods and the increasing cost in water of producing bioethanol. Finally, a major award for a generic pharmacologist.</p>
<div id="crp_related"><h3>Related Posts:</h3><ul><li><a href="http://www.sciencebase.com/science-blog/copper-tone-alchemist.html" rel="bookmark" class="crp_title">Copper Tone Alchemist</a></li><li><a href="http://www.sciencebase.com/science-blog/shedding-light-on-photosynthesis.html" rel="bookmark" class="crp_title">Shedding light on photosynthesis</a></li><li><a href="http://www.sciencebase.com/science-blog/alchemical-anomalies.html" rel="bookmark" class="crp_title">Alchemical Anomalies</a></li><li><a href="http://www.sciencebase.com/science-blog/short-sharp-alchemist.html" rel="bookmark" class="crp_title">Short, Sharp Alchemist</a></li><li><a href="http://www.sciencebase.com/science-blog/alchemy-and-infamy.html" rel="bookmark" class="crp_title">Alchemy and Infamy</a></li></ul></div><p><a href="http://www.sciencebase.com/science-blog/alchemist-checks-oxy-cholesterol-levels.html">Alchemist Checks Oxy Cholesterol Levels</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
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		<title>Swine Flu Update</title>
		<link>http://www.sciencebase.com/science-blog/swine-flu-update.html</link>
		<comments>http://www.sciencebase.com/science-blog/swine-flu-update.html#comments</comments>
		<pubDate>Wed, 06 May 2009 12:00:07 +0000</pubDate>
		<dc:creator>David Bradley</dc:creator>
				<category><![CDATA[Bird Flu]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[H1N1]]></category>
		<category><![CDATA[influenza]]></category>
		<category><![CDATA[swine flu]]></category>

		<guid isPermaLink="false">http://www.sciencebase.com/science-blog/?p=3876</guid>
		<description><![CDATA[Swine flu (H1N1) information leaflets are being delivered to households across the UK today. I suspect they do nothing but increase fear and confuse people, especially as the WHO/UN are about to lower the swine flu alert level.
In the UK, 27 people now have the virus, with 23 in England and four in Scotland and [...]<p><a href="http://www.sciencebase.com/science-blog/swine-flu-update.html">Swine Flu Update</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
]]></description>
			<content:encoded><![CDATA[<p><img style="float:left;width:120px;padding-right:4px;padding-top:5px;" src="../images/swine-flu-leaflet.jpg" alt="swine-flu-leaflet" /><a href="http://www.sciencebase.com/science-blog/swine-flu.html">Swine flu</a> (H1N1) information leaflets are being delivered to households across the UK today. I suspect they do nothing but increase fear and confuse people, especially as the WHO/UN are about to lower the swine flu alert level.</p>
<p>In the UK, 27 people now have the virus, with 23 in England and four in Scotland and the <a href="http://dx.doi.org/10.1136/bmj.b1838">first P2P transmission in the UK</a> has been reported. But, what happened to the thousands, if not millions, affected we were warned of by the media and government and WHO and UN over the last few weeks? It just hasn&#8217;t happened, thankfully.</p>
<p>The leaflets will, of course, explain exactly what is <a href="http://swine-flu.alltop.com/">swine flu</a> (I wonder whether they will explain why we now have to call it <a href="http://www.sciscoop.com/what-does-h1n1-mean.html">H1N1</a> though), who is most at risk, what are the symptoms, and what people can do to reduce their risk of catching the disease.</p>
<p>There was a panic on Monday when the WHO was set to <a href="http://www.windsorstar.com/Health/declare+full+pandemic/1561724/story.html">raise</a> the alert level, but it didn&#8217;t happen they are maintaining it at Phase V, one below the red alert Phase VI, and may <a href="http://www.nytimes.com/2009/05/05/health/05flu.html?ref=americas">lower the panic level</a> in coming days.</p>
<p>I suspect that the average person reading the government leaflet will disregard it as contradictory with what they are now hearing in the news. They may also see it as simply yet another kneejerk reaction from politicians who always to pander to the media biases rather than making their own scientifically informed decisions.</p>
<p>In my original swine flu article, I rather <span style="position:relative;color:white;width:200px;background:#05024F;border-width: 0px 0px 0px 0px;border-style: dotted;border-color: --;filter:alpha(opacity=25);-moz-opacity:.25;opacity:.25;float:right;padding: 0.2em; margin: 1em;font-family:Verdana,Arial, Helvetica,Georgia;font-size: 24px;line-height:26px; text-align: right;"><span style="filter:alpha(opacity=75);-moz-opacity:.75;opacity:.75;">flippantly </span><b> </b>advised <br><b></b>readers <br><b>to </b>forget <br><b></b>avian<span style="filter:alpha(opacity=90);-moz-opacity:.90;opacity:.90;"> influenza</span></span>flippantly advised readers to forget avian influenza and to switch their worries to pigs. But, there was a serious thought behind my silliness because a single disease should not be the focus of fear. <a href="http://www.sciencebase.com/emerging_viruses.html">Emergent diseases</a> could <a href="http://www.slate.com/id/2217005/"> appear in almost any host animal</a> at any time and cross the species barrier through random mutation.</p>
<p><em>Indeed, it&#8217;s certainly not only pigs, birds, and humans, that catch flu. Horses, and even whales and seals, get a form of the disease. But influenza is not the only virus.</em></p>
<p>If a second wave of swine flu does not evolve in the Northern autumn this year, there&#8217;s no reason to assume that some other respiratory virus, perhaps akin to <a href="http://www.sciencebase.com/science-blog/whatever-happened-to-sars.html">SARS</a>, perhaps avian, or something entirely different will appear. Will we be prepared for the onset of a previously unknown respiratory, or other, infection spreading from some obscure mammal in central Asia or elsewhere? Or, will the media incite mass hysteria through scaremongering once again?</p>
<p>How will a <a href="http://www.itv.com/News/Articles/Swine-flu-leaflets-delivered-181088242.html">swine flu pamphlet</a> look in six months time? Confusing and useless, that&#8217;s how. The scaremongering that has gone way beyond any seen at the time of SARS and certainly way beyond the avian influenza concerns, will ultimately look like a story of &#8220;cry wolf&#8221; when the next virus emerges.</p>
<p>The WHO told us a week or two ago that we could no longer contain swine flu, but as it turns out there really was no need to contain it in the first place. It appears (in this wave) not to be as virulent as first feared, <span style="position:relative;color:white;width:200px;background:#05024F;border-width: 0px 0px 0px 0px;border-style: dotted;border-color: --;filter:alpha(opacity=25);-moz-opacity:.25;opacity:.25;float:right;padding: 0.2em; margin: 1em;font-family:Verdana,Arial, Helvetica,Georgia;font-size: 24px;line-height:26px; text-align: right;"><span style="filter:alpha(opacity=75);-moz-opacity:.75;opacity:.75;">mortality </span><b> rates even in Mexico City are </b>far <br><b>lower </b>than <br><b>one would </b>have<span style="filter:alpha(opacity=90);-moz-opacity:.90;opacity:.90;"> expected</span></span>mortality rates even in Mexico City are far lower than one would have expected of a serious illness with the number of dead from H1N1 being revised downwards several times already.</p>
<p>Flu experts from Cambridge, the National Institutes of Health, and The Cleveland Clinic will be talking about the science behind the news of the swine flu outbreak at a <a href="https://www1.gotomeeting.com/register/598005577" rel="nofollow">free webinar</a> on Friday.</p>
<p>All that said, the UK&#8217;s chief medic Liam Donaldson, has <a href="http://news.bbc.co.uk/1/hi/uk/8034260.stm">warned</a> against complacency because flu viruses can change character &#8220;very rapidly&#8221;. It is too early to assume the swine flu outbreak is a mild infection just because no-one in the UK has died, he says.</p>
<p>For years we have been warned that a lethal flu pandemic to match the Spanish Flu of 1918 was long overdue. Birds, and now pigs, have so far failed to deliver, but what&#8217;s that unidentified, flea-bitten rodent running around the market square? Is the tiny creature the harbinger of doom? Will we ever <a href="http://www.sciencebase.com/conquer_infectious_diseases.html">conquer infectious disease</a>?</p>
<p><img style="float:left;padding-right:4px;padding-top:5px;" src="http://www.sciencebase.com/images/research-blogging-icon.png" alt="Research Blogging Icon" /><span class="Z3988" title="ctx_ver=Z39.88-2004&#038;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&#038;rft.jtitle=BMJ&#038;rft_id=info%3Adoi%2F10.1136%2Fbmj.b1838&#038;rfr_id=info%3Asid%2Fresearchblogging.org&#038;rft.atitle=Confirmation+of+first+person+to+person+transmission+of+swine+flu+in+UK+expected+soon&#038;rft.issn=0959-8138&#038;rft.date=2009&#038;rft.volume=338&#038;rft.issue=may01+1&#038;rft.spage=0&#038;rft.epage=0&#038;rft.artnum=http%3A%2F%2Fwww.bmj.com%2Fcgi%2Fdoi%2F10.1136%2Fbmj.b1838&#038;rft.au=O%27Dowd%2C+A.&#038;rfe_dat=bpr3.included=1;bpr3.tags=Health">O&#8217;Dowd, A. (2009). Confirmation of first person to person transmission of swine flu in UK expected soon <span style="font-style: italic;">BMJ, 338</span> (may01 1) DOI: <a rev="review" href="http://dx.doi.org/10.1136/bmj.b1838">10.1136/bmj.b1838</a></span></p>
<div id="crp_related"><h3>Related Posts:</h3><ul><li><a href="http://www.sciencebase.com/science-blog/swine-flu-faq.html" rel="bookmark" class="crp_title">Swine Flu FAQ</a></li><li><a href="http://www.sciencebase.com/science-blog/swine-flu.html" rel="bookmark" class="crp_title">Swine Flu</a></li><li><a href="http://www.sciencebase.com/science-blog/swine-flu-trending-again.html" rel="bookmark" class="crp_title">Swine Flu Trending Again</a></li><li><a href="http://www.sciencebase.com/science-blog/h1n1-swine-flu-update.html" rel="bookmark" class="crp_title">H1N1 Swine Flu Update</a></li><li><a href="http://www.sciencebase.com/science-blog/whatever-happened-to-sars.html" rel="bookmark" class="crp_title">Whatever Happened to SARS?</a></li></ul></div><p><a href="http://www.sciencebase.com/science-blog/swine-flu-update.html">Swine Flu Update</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
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		<title>Raspberry Ripple Galaxy</title>
		<link>http://www.sciencebase.com/science-blog/raspberry-ripple-galaxy.html</link>
		<comments>http://www.sciencebase.com/science-blog/raspberry-ripple-galaxy.html#comments</comments>
		<pubDate>Wed, 29 Apr 2009 12:00:44 +0000</pubDate>
		<dc:creator>David Bradley</dc:creator>
				<category><![CDATA[Bird Flu]]></category>
		<category><![CDATA[Astronomy]]></category>
		<category><![CDATA[ethyl formate]]></category>
		<category><![CDATA[raspberries]]></category>

		<guid isPermaLink="false">http://www.sciencebase.com/science-blog/?p=3868</guid>
		<description><![CDATA[Recently, an innocuous-seeming press release was released by German astronomers announcing that they had found two of the most complex molecules ever in space &#8211; n-propyl cyanide, more commonly known to chemists as butyronitrile, and ethyl formate. Now, butyronitrile is a nasty poison with a characteristic odour and I&#8217;m sure you&#8217;d get a whiff of [...]<p><a href="http://www.sciencebase.com/science-blog/raspberry-ripple-galaxy.html">Raspberry Ripple Galaxy</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
]]></description>
			<content:encoded><![CDATA[<p><img style="float:left;width:120px;padding-right:4px;padding-top:5px;" src="../images/galactic-rasberry-flavor.jpg" alt="galactic-rasberry-flavor" title="galactic-rasberry-flavor" />Recently, an innocuous-seeming press release was released by German astronomers announcing that they had found two of the most complex molecules ever in space &#8211; n-propyl cyanide, more commonly known to chemists as butyronitrile, and <a href="http://en.wikipedia.org/wiki/Ethyl_formate">ethyl formate</a>. Now, butyronitrile is a nasty poison with a characteristic odour and I&#8217;m sure you&#8217;d get a whiff of bitter almonds as you lay dying should you breathe it in too deep or get a mouthful of the stuff. Ethyl formate is altogether different.</p>
<p>Ethyl formate, The Guardian&#8217;s science correspondent <a href="http://www.guardian.co.uk/science/2009/apr/21/space-raspberries-amino-acids-astrobiology">Ian Sample</a> found out (I think already knew) is the fragrant ester molecule that gives raspberries their distinct flavour. It also smells vaguely of rum. Having latched on to this fact, Sample went to town on his galactic press release suggesting, in a Pythonesque manner, that your galaxy smells of raspberries.</p>
<p>It was a great hook for his popular science article in the paper, of course, and the idea was subsequently picked up by other outlets that had initially missed the raspberry flavour additive. With my SpectroscopyNOW deadline looming, I reasoned that the research was valid enough, ignoring the raspberries, for the news channel and set about explaining the ins and outs of the discovery and its relevance.</p>
<p><em>If complex molecules such as ethyl formate and butyronitrile can be found in space then perhaps the building blocks of proteins, amino acids, might also be present, which could lend evidence to space as being the seeding ground for the precursors to life on earth and perhaps extraterrestrial life too.</em></p>
<p>I contacted the leader of the astronomical team that had made this startling discovery to find out more details about the research. Arnaud Belloche of the Max Planck Institute for Radio Astronomy (MPIfR) in Bonn, Germany, was unsurprisingly quick to point out that the raspberry connection was essentially a journalistic invention of The Guardian and has no bearing on the research at all.</p>
<p>&#8220;We did not report on the flavour of raspberry or the smell of rum,&#8221; he told me, &#8220;For us, astronomers, it is unimportant. What is important is that these two molecules are quite complex compared to the other molecules discovered in space, and that their discovery suggests that even more complex molecules are likely present in the interstellar medium.&#8221;</p>
<p>He did, however, concede that the reference to raspberries and rum makes the story more interesting for the lay public. &#8220;It is fine to mention it, but it should be made clear that it is astronomically irrelevant.&#8221; Of course, that much should be immediately obvious to most readers of SpectroscopyNOW.</p>
<p>It does raise an interesting point about science journalism. <span style="position:relative;color:white;width:200px;background:#05024F;border-width: 0px 0px 0px 0px;border-style: dotted;border-color: --;filter:alpha(opacity=25);-moz-opacity:.25;opacity:.25;float:right;padding: 0.2em; margin: 1em;font-family:Verdana,Arial, Helvetica,Georgia;font-size: 24px;line-height:26px; text-align: right;"><span style="filter:alpha(opacity=75);-moz-opacity:.75;opacity:.75;">Is </span><b> </b>it <br><b></b>stretching <br><b>the </b>truth, <br><b>or </b>dumbing<span style="filter:alpha(opacity=90);-moz-opacity:.90;opacity:.90;"> down</span></span>Is it stretching the truth, or dumbing down, too much to mention that the molecules found in outer space have a link with the flavour of raspberries? How far should we go to make rather technical and esoteric science appeal to a lay audience? Surely, it would have been enough that these complex molecules were found in space and may have a bearing on the origins of life on earth.</p>
<p>Perhaps not. A press release blankly referring to two chemicals with names obscure to non-chemists would usually have little impact. It was picked up by some outlets. However, it was only once Ian Sample had made the raspberry connection and used the Monty Python Holy Grail insult allusion (if your galaxy doesn&#8217;t smell of raspberries then your mother certainly still smells of elderberries) that more of the wider media jumped on to the idea of a galaxy smelling faintly of raspberries and rum and took it mainstream.</p>
<p>Indeed, we have a control to test this, because the same team use the same data lasts year to <a href="http://www.mpg.de/english/illustrationsDocumentation/documentation/pressReleases/2008/pressRelease20080325/">reveal</a> that the same galactic gas cloud also contains aminoacetonitrile. This molecule is a<br />
likely chemical precursor of the amino acid glycine, which has perhaps a much greater bearing on the origins of life than the raspberry flavouring, but unfortunately has none of the fruity allusions.</p>
<p>Which headline would grab <em>you</em>?</p>
<p><strong>Scientists Spot Amino Acetonitrile in the Middle of Milky Way</strong></p>
<p>or </p>
<p><strong>Make That A Raspberry Pan Galactic Gargle Blaster</strong></p>
<p>You can read my full write-up complete with overblown flavouring-enriched title in the May 1 issue of <a href="http://www.spectroscopynow.com/coi/cda/detail.cda?id=21408&#038;type=Feature&#038;chId=3&#038;page=1">SpectroscopyNOW</a>.</p>
<p>Finally, I asked Belloche for his predictions of when we might discover amino acids in space and get a true feeling for the notion of cosmic dust seeding the primordial earth.</p>
<p>&#8220;I guess we&#8217;ll have to wait many years&#8230;&#8221; he told me, &#8220;A simple estimate we did in<br />
our publication on aminoacetonitrile (Belloche et al. 2008, A&#038;A, 482, 179)<br />
suggests that the abundance of glycine, if present in the interstellar<br />
medium, is well below the best upper limits derived so far, by maybe one<br />
or two orders of magnitude, so it will be hard (but not impossible!) to<br />
find it.&#8221;</p>
<p>His prediction doesn&#8217;t leave a bitter taste in the mouth, but nor does it come up tasting of raspberries.</p>
<div id="crp_related"><h3>Related Posts:</h3><ul><li><a href="http://www.sciencebase.com/science-blog/spectral-alchemist.html" rel="bookmark" class="crp_title">Spectral Alchemist</a></li><li><a href="http://www.sciencebase.com/science-blog/we-are-all-made-of-stars.html" rel="bookmark" class="crp_title">We are all made of stars</a></li><li><a href="http://www.sciencebase.com/science-blog/extraterrestrial-life-chirality.html" rel="bookmark" class="crp_title">ET on the Other Hand</a></li><li><a href="http://www.sciencebase.com/science-blog/a-billion-light-years-from-home.html" rel="bookmark" class="crp_title">A Billion Light Years from Home</a></li><li><a href="http://www.sciencebase.com/science-blog/arsenic-x-rays-ets-aminos-teasing.html" rel="bookmark" class="crp_title">Arsenic, Aminos, X-ray, Teasing</a></li></ul></div><p><a href="http://www.sciencebase.com/science-blog/raspberry-ripple-galaxy.html">Raspberry Ripple Galaxy</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
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		<title>Alchemy Under the Spotlight</title>
		<link>http://www.sciencebase.com/science-blog/alchemy-under-the-spotlight.html</link>
		<comments>http://www.sciencebase.com/science-blog/alchemy-under-the-spotlight.html#comments</comments>
		<pubDate>Fri, 19 Dec 2008 13:00:05 +0000</pubDate>
		<dc:creator>David Bradley</dc:creator>
				<category><![CDATA[Bird Flu]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[podcast]]></category>
		<category><![CDATA[chemistry]]></category>
		<category><![CDATA[Environment]]></category>

		<guid isPermaLink="false">http://www.sciencebase.com/science-blog/?p=2952</guid>
		<description><![CDATA[This week, The Alchemist is digging in the dirt to find out about the carbon cycle and climate change, taking his whisky (or is it whiskey) with or without water, and discovering how to juggle molecules, on the other hand. Also in biochemical news this week, the crystal structure of a plant hormone receptor is [...]<p><a href="http://www.sciencebase.com/science-blog/alchemy-under-the-spotlight.html">Alchemy Under the Spotlight</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
]]></description>
			<content:encoded><![CDATA[<p><img style="float: left; width: 120px; padding-right: 4px; padding-top: 5px;" src="http://www.sciencebase.com/images/atlantic-bathymetry.jpg" alt="atlantic-bathymetry">This week, <a href="http://www.chemweb.com/content/alchemist/alchemist_20081210.html">The Alchemist</a> is digging in the dirt to find out about the carbon cycle and climate change, taking his <a href="http://www.sciencebase.com/science-blog/water-of-life.html">whisky</a> (or is it whiskey) with or without water, and discovering how to juggle molecules, on the other hand. Also in biochemical news this week, the crystal structure of a plant hormone receptor is revealed while researchers in Israel focus on blocking the protein misfolding that occurs in Alzheimer&#8217;s disease.</p>
<p>And, under the December <a href="http://www.intute.ac.uk/sciences/spotlight/archive.html">physical sciences Spotlight</a></p>
<p>It&#8217;s all in the marine mix &#8211; Mixing of surface waters in the Atlantic Ocean seems to have reverted in the winter of 2007/2008 to &#8220;normal&#8221; levels for the first time in almost a decade&#8230;</p>
<p>Well, wooden you know? &#8211; New materials that look and behave like plastics can be produced from a renewable raw material known as liquid wood. The bioplastics promise to displace petroleum as a feedstock for certain applications&#8230;</p>
<p>Running with knives &#8211; Stabbing is the most common form of murder in the UK and Ireland. However, while forensic scientists understand the basics of the process&#8230;</p>
<div id="crp_related"><h3>Related Posts:</h3><ul><li><a href="http://www.sciencebase.com/science-blog/spotlight-on-the-alchemist.html" rel="bookmark" class="crp_title">Spotlight on the Alchemist</a></li><li><a href="http://www.sciencebase.com/science-blog/midsummer-alchemist.html" rel="bookmark" class="crp_title">Midsummer Alchemist</a></li><li><a href="http://www.sciencebase.com/science-blog/physical-science-news.html" rel="bookmark" class="crp_title">Arctic droughts, plastic breakdown, and liquid telescopes</a></li><li><a href="http://www.sciencebase.com/science-blog/physical-spotlight.html" rel="bookmark" class="crp_title">Physical Spotlight</a></li><li><a href="http://www.sciencebase.com/science-blog/volcanoes-moons-pearls-and-alchemy.html" rel="bookmark" class="crp_title">Volcanoes, Moons, Pearls, and Alchemy</a></li></ul></div><p><a href="http://www.sciencebase.com/science-blog/alchemy-under-the-spotlight.html">Alchemy Under the Spotlight</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
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		<title>Top Ten Mutants</title>
		<link>http://www.sciencebase.com/science-blog/top-ten-snps.html</link>
		<comments>http://www.sciencebase.com/science-blog/top-ten-snps.html#comments</comments>
		<pubDate>Fri, 05 Dec 2008 13:00:15 +0000</pubDate>
		<dc:creator>David Bradley</dc:creator>
				<category><![CDATA[Bird Flu]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[DNA]]></category>
		<category><![CDATA[genetics]]></category>
		<category><![CDATA[Health]]></category>

		<guid isPermaLink="false">http://www.sciencebase.com/science-blog/?p=2729</guid>
		<description><![CDATA[If you ever thought genetics was only about disease, then check out the popular SNPs list on SNPedia. A SNP (pronounced &#8220;snip&#8221;) is a single nucleotide polymorphism, which in BradSpeak(TM) is basically a difference in a bit of your DNA that makes you different from the rest. 
Anyway, here&#8217;s the Top Five SNPs that might [...]<p><a href="http://www.sciencebase.com/science-blog/top-ten-snps.html">Top Ten Mutants</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
]]></description>
			<content:encoded><![CDATA[<p><img style="float: left; width: 120px; padding-right: 4px; padding-top: 5px;" src="http://www.sciencebase.com/images/dna-test.jpg" alt="dna-test">If you ever thought genetics was only about disease, then check out the popular SNPs list on <a href="http://www.snpedia.com/index.php/SNPedia">SNPedia</a>. A <a href="http://genetics.suite101.com/article.cfm/single_nucleotide_polymorphisms">SNP</a> (pronounced &#8220;snip&#8221;) is a single nucleotide polymorphism, which in BradSpeak(TM) is basically a difference in a bit of your DNA that makes you different from the rest. </p>
<p>Anyway, here&#8217;s the Top Five SNPs that might be described as having no obvious direct medical importance.</p>
<ul>
<li><a href="http://www.snpedia.com/index.php/Rs1815739">rs1815739</a> sprinters vs endurance athletes (I reckon I lack both)
</li>
<li><a href="http://www.snpedia.com/index.php/Rs7495174">rs7495174</a> green eye color and <a href="http://www.snpedia.com/index.php/Rs12913832">rs12913832</a> for blue eye color
</li>
<li><a href="http://www.snpedia.com/index.php/Rs6152">rs6152</a> can prevent baldness (this was discovered far too late for me)
</li>
<li><a href="http://www.snpedia.com/index.php/Rs1805009">rs1805009</a> determines red hair (some &#8220;comedians&#8221; might suggest this be swapped to the second list below)
</li>
<li><a href="http://www.snpedia.com/index.php/Rs17822931">rs17822931</a> determines earwax (and presumably how well your ears stay clear of insect infestation)
</li>
</ul>
<p>And, here&#8217;s the more sober list of SNPs that could have serious medical implications should you happen to discover you have one of these when you have your genome read by the likes of <a href="https://www.23andme.com/">23andMe</a>.</p>
<ul>
<li><a href="http://www.snpedia.com/index.php/Rs9939609">rs9939609</a> triggers obesity (not a genetic excuse for eating too much)
</li>
<li><a href="http://www.snpedia.com/index.php/Rs662799">rs662799</a> prevents weight gain from high fat diets (ditto)
</li>
<li><a href="http://www.snpedia.com/index.php/Rs4420638">rs4420638</a> and <a href="http://www.snpedia.com/index.php/Rs429358">rs429358</a> can raise the risk of Alzheimer&#8217;s disease by tenfold or more
</li>
<li><a href="http://www.snpedia.com/index.php/Rs7903146">rs7903146</a> and <a href="http://www.snpedia.com/index.php/Rs12255372">rs12255372</a> linked to type-2 diabetes, the latter also to breast cancer
</li>
<li><a href="http://www.snpedia.com/index.php/Rs324650">rs324650</a> influences alcohol dependence, <a href="http://www.snpedia.com/index.php/Rs1799971">rs1799971</a> makes alcohol cravings stronger (it would not be funny to say, &#8220;Mine&#8217;s a pint, with a whisky chaser&#8221;, right now)
</li>
</ul>
<p>It was a <a href="http://twitter.com/sciencebase">twitter</a> discussion between SNP experts <a href="http://twitter.com/mza">mza</a> and <a href="http://twitter.com/attilacsordas">attilacsordas</a> that led me to the SNP list.</p>
<div id="crp_related"><h3>Related Posts:</h3><ul><li><a href="http://www.sciencebase.com/science-blog/two-for-tea.html" rel="bookmark" class="crp_title">Two for tea</a></li><li><a href="http://www.sciencebase.com/science-blog/fitting-genes-to-obesity-problem.html" rel="bookmark" class="crp_title">Fitting Genes to Obesity Problem</a></li><li><a href="http://www.sciencebase.com/science-blog/chemists-are-rankers.html" rel="bookmark" class="crp_title">Chemists Pull Rank</a></li><li><a href="http://www.sciencebase.com/science-blog/science-movies.html" rel="bookmark" class="crp_title">Science Movies</a></li><li><a href="http://www.sciencebase.com/science-blog/chemical-blogspace-stats.html" rel="bookmark" class="crp_title">Chemical Blogspace Stats</a></li></ul></div><p><a href="http://www.sciencebase.com/science-blog/top-ten-snps.html">Top Ten Mutants</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
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		<title>Shedding Light on Neon Signs</title>
		<link>http://www.sciencebase.com/science-blog/neon-signs.html</link>
		<comments>http://www.sciencebase.com/science-blog/neon-signs.html#comments</comments>
		<pubDate>Wed, 03 Dec 2008 13:00:28 +0000</pubDate>
		<dc:creator>David Bradley</dc:creator>
				<category><![CDATA[Bird Flu]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[chemistry]]></category>
		<category><![CDATA[noble gases]]></category>
		<category><![CDATA[Physics]]></category>

		<guid isPermaLink="false">http://www.sciencebase.com/science-blog/?p=2766</guid>
		<description><![CDATA[As regular readers know, I like to keep a fairly close eye on what Sciencebase visitors are searching for so that I can put together new posts that provide answers to the questions readers want answering. Recently, there has been a spate of search queries related to neon signs. Perhaps not the most exciting of [...]<p><a href="http://www.sciencebase.com/science-blog/neon-signs.html">Shedding Light on Neon Signs</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
]]></description>
			<content:encoded><![CDATA[<p><a href="http://www.rsc.org/chemsoc/visualelements/PAGES/neon.html"><img style="float: left; width: 120px; padding-right: 4px; padding-top: 5px;" src="http://www.sciencebase.com/images/neon-sign.jpg" alt="neon-sign"></a>As regular readers know, I like to keep a fairly close eye on what Sciencebase visitors are searching for so that I can put together new posts that provide answers to the questions readers want answering. Recently, there has been a spate of search queries related to neon signs. Perhaps not the most exciting of subjects, but there is some nice chemistry to be learned from all the different colours available, so I thought I&#8217;d shed some light on the subject of noble gas illumination.</p>
<p>Incidentally, for those unaware of the history of noble gases, they were at one time known as inert gases because chemists thought their full outer shell of electrons made them unreactive. As more and more reactions for these so-called inert gases were discovered, it became necessary to abandon the &#8220;inert&#8221; label and focus on their nobility.</p>
<p>A neon light is not really much more than a fluorescent tube (actually, it&#8217;s less as it needs no phosphor coating on the inside), neon tubes contain the noble gas neon, surprise, surprise. Pass an electric discharge through a tube containing low pressure neon and it will glow with that familiar orange-red glow, so evocative of late-night bars and sleazy movies.</p>
<p><em>A neon light uses a very high voltage to propel an electric current through a low-density gas of neon atoms held in a glass tube. Charges from the electrode at each end of the tube fly through the gas colliding frequently with neon atoms and transferring some of their energy to the neon atoms. This kicks the neon atoms into a higher energy, excited state, with an electron in a higher orbital than normal. This excited state does not last and as the electron loses energy the atom drops back to a lower energy state and releases a photon of light. The energy of this photon is equivalent to the energy fall and for neon atoms that coincides with an energy that produces a reddish glow.</em></p>
<p>Many people, unfamiliar with the noble gas group of the periodic table &#8211; the p-block, assume that all coloured fluorescent tubes used in signage are neon signs. However, there are two ways to produce other colours &#8211; paint a standard mercury tube with the colour you want or far more effectively use a different noble gas in the tube instead of neon, perhaps together with mercury vapour to give a stronger glow. Here&#8217;s a break down of the <a href="http://en.wikipedia.org/wiki/Gas_discharge">discharge colours</a> for each noble gas.</p>
<p>Helium (He) &#8211; Orangey white, usually<br />
Neon (Ne) &#8211; Orange-red glow<br />
Argon (Ar) &#8211; Violet, pale lavender blue<br />
Krypton (Kr) &#8211; Grayish dim off-white<br />
Xenon (Xe) &#8211; Blue-grey<br />
Radon (Rn) &#8211; radioactive, not used in lighting</p>
<p>Of course, it is not only the noble gases and mercury vapour that can be added to lighting tubes. Nitrogen produces a slightly pinker glow than argon, oxygen glows violet-lavender but dimly. Hydrogen glows lavender at low currents, but pinkish magenta above 10 milliAmps, while carbon dioxide produces a slight bluish-white. Mercury can be made to glow in the ultraviolet, and is used in so-called black lights. Sodium vapour at low pressure glows the bright yellow of street lighting, particularly in England. And, even water vapour produces a glow similar to hydrogen, only dimmer 		.</p>
<div id="crp_related"><h3>Related Posts:</h3><ul><li><a href="http://www.sciencebase.com/science-blog/blue-leds-are-too-bright.html" rel="bookmark" class="crp_title">Blue LEDs are too bright</a></li><li><a href="http://www.sciencebase.com/science-blog/rebuilding-the-periodic-table.html" rel="bookmark" class="crp_title">Rebuilding the Periodic Table</a></li><li><a href="http://www.sciencebase.com/science-blog/indigo-missing.html" rel="bookmark" class="crp_title">Indigo missing</a></li><li><a href="http://www.sciencebase.com/science-blog/elemental-celebrities.html" rel="bookmark" class="crp_title">Elemental Celebrities</a></li><li><a href="http://www.sciencebase.com/science-blog/photochemistry-without-light.html" rel="bookmark" class="crp_title">Photochemistry without light</a></li></ul></div><p><a href="http://www.sciencebase.com/science-blog/neon-signs.html">Shedding Light on Neon Signs</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
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		<item>
		<title>Vitamin D Dilemma &#8211; To D or Not To D</title>
		<link>http://www.sciencebase.com/science-blog/vitamin-d-dilemma.html</link>
		<comments>http://www.sciencebase.com/science-blog/vitamin-d-dilemma.html#comments</comments>
		<pubDate>Fri, 14 Nov 2008 13:00:37 +0000</pubDate>
		<dc:creator>David Bradley</dc:creator>
				<category><![CDATA[Bird Flu]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[Health]]></category>
		<category><![CDATA[melamine]]></category>
		<category><![CDATA[toxins]]></category>

		<guid isPermaLink="false">http://www.sciencebase.com/science-blog/?p=2716</guid>
		<description><![CDATA[Radiological health expert Daniel Hayes who works at the New York City Department of Health and Mental Hygiene recent published on the subject of low dose radiation and the possibility that a form of vitamin D could be the key to protecting us from background radiation and perhaps save lives following a nuclear incident or [...]<p><a href="http://www.sciencebase.com/science-blog/vitamin-d-dilemma.html">Vitamin D Dilemma &#8211; To D or Not To D</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
]]></description>
			<content:encoded><![CDATA[<p><img style="float: left; width: 120px; padding-right: 4px; padding-top: 5px;" src="http://www.sciencebase.com/images/sunbathing-girl.jpg" alt="" title="sunbathing-girl">Radiological health expert Daniel Hayes who works at the New York City Department of Health and Mental Hygiene recent published on the subject of low dose radiation and the possibility that a form of vitamin D could be the key to protecting us from background radiation and perhaps save lives following a nuclear incident or terrorist attack involving a so-called dirty bomb.</p>
<p>Hayes explains that calcitriol, the active form of vitamin D, could be the oral agent, that medics have been searching for to provide a quick, simple, and inexpensive way to protect us when the warning sirens sound.</p>
<p>Having spoken to various researchers with markedly different views on vitamin D, its benefits and its potentially detrimental effects on health, I wasn&#8217;t too sure about how adding yet another dietary supplement to our daily intake would be beneficial. I asked Hayes to expand.</p>
<p>&#8220;One should get vitamin D3 either from solar irradiation of the skin or from dietary supplementation,&#8221; he told me, &#8220;I personally take 2000 IU daily which is obtained without a physician&#8217;s prescription&#8230;2000 IU is definitely safe, I can dig up the documentation.&#8221;</p>
<p>There are claims from some quarters that getting plenty of sun is a good thing, and they&#8217;ve published a guide, which I mentioned in a post on <a href="http://www.sciencebase.com/science-blog/how-to-sunbathe-safely.html">how to sunbathe safely</a>, but the cancer research charities suggest that really there is no safe way to get a sun tan and that a dietary supplement of vitamin D would be a much safer alternative to increasing one&#8217;s exposure to the sun.</p>
<p>However, the only prescription vitamin D preparation available in the US and the US is vitamin D2 (ergocalciferol). &#8220;Vitamin D2 should not be regarded as a nutrient suitable for supplementation or fortification,&#8221; Hayes says, &#8220;physicians resorting to the use of vitamin D2 should be aware of its markedly lower potency and shorter duration of action relative to vitamin D3.&#8221; As such, he asserts that you should get vitamin D3 either from the sun or through dietary supplementation.</p>
<p>Unfortunately, vitamin D, being several different compounds with different physiological activities, is not a clearcut medical case. There are some who see it as a &#8220;clap-hands-hosanna&#8221;, but there are others, particularly scientists associated with the <a href="http://www.sciencebase.com/science-blog/quick-fix-for-chronic-disease.html">Marshall Protocol</a>, and in the California non-profit association Autoimmunity Research Foundation, who see it as something to be avoided.</p>
<p>Biomedical researcher Trevor Marshall, who runs the ARF, has produced what has been described as the first working model of vitamin D metabolism. Proal explains that the model, which demonstrates the complexity of vitamin D metabolism, emphasizes the importance of distinguishing between the different forms of vitamin D. According to ARF scientists, the form of vitamin D that Hayes recommends and takes himself &#8211; that derived from supplements and excessive sun exposure &#8211; is apparently converted into 25-hydroxyvitamin-D or calcidiol. &#8220;Unfortunately,&#8221; says Proal, &#8220;molecular biologists have long realized that 25-hydroxyvitamin-D3 is actually a potent secosteroid. Marshall&#8217;s research indicates that, like corticosteroid medications, it actually slows the immune response, and this ultimately allows chronic bacterial infection to exist uninhibited, which could be the ultimate cause of such inflammation. &#8220;Under such circumstances,&#8221; says Proal, &#8220;25-hydroxyvitamin D&#8217;s ability to slow the immune response allows for short-term relief, but aggravates the disease over the long-term by allowing chronic pathogens to proliferate with much greater ease.&#8221;          </p>
<p><span style="position:relative;color:white;width:200px;background:#05024F;border-width: 0px 0px 0px 0px;border-style: dotted;border-color: --;filter:alpha(opacity=25);-moz-opacity:.25;opacity:.25;float:right;padding: 0.2em; margin: 1em;font-family:Verdana,Arial, Helvetica,Georgia;font-size: 24px;line-height:26px; text-align: right;"><span style="filter:alpha(opacity=75);-moz-opacity:.75;opacity:.75;">The </span><b> </b>difference <br><b></b>between <br><b>cacitriol </b>and <br><b>calcidiol boils </b>down <br><b>to </b>the <br><b>manner in </b>which <br><b>they bind the </b>Vitamin <br><b>D </b>Receptor<span style="filter:alpha(opacity=90);-moz-opacity:.90;opacity:.90;"> VDR</span></span>The difference between cacitriol and calcidiol boils down to the manner in which they bind the Vitamin D Receptor VDR &#8211; a receptor that largely controls the activity of the innate immune response and the transcription of hundreds, and possibly thousands of genes. While calcitriol activates the VDR, Marshall&#8217;s in silico data demonstrates that calcidiol has the opposite effect. So according to ARF researchers, Hayes may be right about about calcitriol&#8217;s ability to activate genes that allow for protection against radiation. But, taking vitamin D orally or basking in the sun will produce a form of vitamin D that has the exact opposite effect of the beneficial results that Hayes predicts.</p>
<p>Reporting for <a href="http://www.cbc.ca/technology/story/2008/10/27/f-strauss-vitamind.html">CBCnews.ca</a>, Stephen Strauss explains how Marshall researchers looked at more than 1000 people with a host of autoimmune and related diseases. &#8220;When combined with a particular <a href="http://www.treatment-centers.net">drug treatment</a> program, people who consciously tried not to take vitamin D and stayed out of the sun showed an often-dramatic reduction in symptoms. Dramatic means a reduction of 81 per cent in symptoms for people suffering from conditions ranging from Type 2 diabetes, to rheumatoid arthritis, to multiple sclerosis, Lyme disease and Crohn&#8217;s disease.&#8221;</p>
<p>It seems that some forms of vitamin D have steroidal activity and rather than helping fight disease it modulates the immune system and potentially increases inflammation. Marshall explained the apparent paradox in the journal BioEssays:</p>
<p><em>&#8220;For half a century, medical science has been noting the association between vitamin D serum levels and disease. What developed has been a concept of &#8216;vitamin D deficiency&#8217; based solely on the notion that &#8216;low&#8217; vitamin D serum levels somehow cause disease processes. But this ignores the alternative hypothesis — that the disease processes themselves regulate the vitamin D metabolism —that the observed &#8216;low&#8217; values of vitamin D in disease are a result of the disease process, not the cause.&#8221;</em></p>
<p>I asked Amy Proal, a medical researcher and an advocate of the Marshall Protocol, for her thoughts on vitamin D. &#8220;Who is getting better as the medical community dishes out more and more vitamin D,&#8221; she asked in response. She points to a report in <a href="http://www.nytimes.com/2008/10/28/health/28kidn.html?_r=1&amp;sq=kidney%20stones&amp;st=cse&amp;oref=slogin&amp;scp=2&amp;pagewanted=print">The New York Times</a> that says children as young as five years are developing kidney stones and that infant eczema is rising at an alarming rate, these trends and the trend towards obesity, she says are not what one would se with genetic or autoimmune diseases. &#8220;They are trends that indicate chronic infection egged on by the use of immmunosuppressive steroids, and vitamin D fortification, among other trends of modern medicine,&#8221; she says. The NYT article alludes to the recent <a href="http://www.sciencebase.com/science-blog/melamine-in-milk.html">melamine in milk scandal in China</a>, but stakes its claim on common salt (sodium chloride) being to blame for the rise in kidney stone incidence in the US.</p>
<p>So, is vitamin D good or bad? Either way, which forms should we allow ourselves to be exposed to and which forms should we really avoid? And, if there&#8217;s a radiation incident&#8230;</p>
<p><span class="Z3988" title="ctx_ver=Z39.88-2004&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&amp;rft.jtitle=International+Journal+of+Low+Radiation&amp;rft.id=info:DOI/10.1504%2FIJLR.2008.020980&amp;rft.atitle=The+protection+afforded+by+vitamin+D+against+low+radiation+damage&amp;rft.date=2008&amp;rft.volume=5&amp;rft.issue=4&amp;rft.spage=368&amp;rft.epage=0&amp;rft.artnum=http%3A%2F%2Fwww.inderscience.com%2Flink.php%3Fid%3D20980&amp;rft.au=Daniel+P.+Hayes&amp;bpr3.included=1&amp;bpr3.tags=Biology">Daniel P. Hayes (2008). The protection afforded by vitamin D against low radiation damage <span style="font-style: italic;">International Journal of Low Radiation, 5</span> (4) DOI: <a rev="review" href="http://dx.doi.org/10.1504/IJLR.2008.020980">10.1504/IJLR.2008.020980</a></span></p>
<div id="crp_related"><h3>Related Posts:</h3><ul><li><a href="http://www.sciencebase.com/science-blog/marshall-protocol" rel="bookmark" class="crp_title">Marshall Protocol</a></li><li><a href="http://www.sciencebase.com/science-blog/trevor-marshall-lecture" rel="bookmark" class="crp_title">Trevor Marshall Lecture</a></li><li><a href="http://www.sciencebase.com/science-blog/friends-and-i-were-discussing-claim.html" rel="bookmark" class="crp_title">US Consumers and Vitamins</a></li><li><a href="http://www.sciencebase.com/science-blog/how-to-sunbathe-safely.html" rel="bookmark" class="crp_title">How to Sunbathe Safely</a></li><li><a href="http://www.sciencebase.com/science-blog/quick-fix-for-chronic-disease.html" rel="bookmark" class="crp_title">Slowburn treatment for chronic disease</a></li></ul></div><p><a href="http://www.sciencebase.com/science-blog/vitamin-d-dilemma.html">Vitamin D Dilemma &#8211; To D or Not To D</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
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		<title>Open Access in Africa</title>
		<link>http://www.sciencebase.com/science-blog/open-access-in-africa.html</link>
		<comments>http://www.sciencebase.com/science-blog/open-access-in-africa.html#comments</comments>
		<pubDate>Fri, 24 Oct 2008 12:00:50 +0000</pubDate>
		<dc:creator>David Bradley</dc:creator>
				<category><![CDATA[Bird Flu]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[developing world]]></category>
		<category><![CDATA[open-access]]></category>

		<guid isPermaLink="false">http://www.sciencebase.com/science-blog/?p=2543</guid>
		<description><![CDATA[There is much talk about Open Access. There are those in academia who argue the pros extensively in all fields, biology, chemistry, computing. Protagonists are making massive efforts to convert users to this essentially non-commercial form of information and knowledge.
Conversely, there are those in the commercial world who ask, who will pay for OA endeavours [...]<p><a href="http://www.sciencebase.com/science-blog/open-access-in-africa.html">Open Access in Africa</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
]]></description>
			<content:encoded><![CDATA[<p><img style="float: left; width: 120px; padding-right: 4px; padding-top: 5px;" src="http://www.sciencebase.com/images/development-heatmap-africa.png" alt="development-heatmap-africa">There is much talk about <a href="http://www.earlham.edu/%7Epeters/writing/wsis2.htm">Open Access</a>. There are those in academia who argue the pros extensively in all fields, biology, chemistry, computing. Protagonists are making <a href="http://scienceblogs.com/commonknowledge/2008/10/happy_open_access_day.php">massive efforts</a> to convert users to this essentially non-commercial form of information and knowledge.</p>
<p>Conversely, there are those in the commercial world who ask, who will pay for <a href="http://sdu.ictp.it/openaccess/book.html">OA endeavours</a> and how can growth (current recession and credit crunch aside) continue in a capitalist, democratic society, without the opportunity to profit from one&#8217;s intellectual property.</p>
<p>Those for and against weigh up both sides of the argument repeatedly. However, they often neglect one aspect of the concept of <a href="http://www.biomedcentral.com/developingcountries/">Open Access</a>: how they <a href="http://www.semanticlibrary.net/2008/10/14/happy-open-access-day/">might extend it to the developing nations</a>, to what ends, and with what benefits.</p>
<p>Writing in a forthcoming paper in the <em>International Journal of Technology Management</em>, Williams Nwagwu of the Africa Regional Center for Information Science (ARCIS) at the University of Ibadan, Nigeria and Allam Ahmed of the Science and Technology Policy Research (SPRU) at the University of Sussex, UK, suggest that developing countries, particularly those in Sub-Saharan Africa (SSA), are suffering from a scientific information famine. They say that beginning at the local level and networking nationally could help us realise the potential for two-way information traffic.</p>
<p><em>The expectation that the internet would facilitate scientific information flow does not seem to be realisable, owing to the restrictive subscription fees of the high quality sources and the beleaguering inequity in the access and use of the internet and other Information and Communication Technology (ICT) resources.</em></p>
<p>Nwagwu and Ahmed have assessed the possible impact the Open Access movement may have on addressing this inequity in SSA by removing the restrictions on accessing scientific knowledge. They highlight the opportunities and challenges but also demonstrate that there are often mismatches between what the &#8220;donor&#8221; countries and organisations might reasonably offer and what the SSA countries can actually implement. Moreover, they explain the slow uptake of Open Access in SSA as being related to the perception of the African scientists towards the movement and a lack of concern by policymakers.</p>
<p>The researchers suggest that the creation of a digital democracy could prevent the widening information gap between the developed and the developing world. Without the free flow of information between nations, particularly in and out of Africa and other developing regions, there may be no true global economy.</p>
<p>&#8220;Whatever might emerge as a global economy will be skewed in favour of the information-haves, leaving behind the rich resources of Africa and other regions, which are often regarded as information have-nots,&#8221; the researchers say. It is this notion that means that it is not only SSA that will lose out on the lack of information channels between the SSA and the developed world, but also those in the developed world.</p>
<p>&#8220;<span style="position:relative;color:white;width:200px;background:#05024F;border-width: 0px 0px 0px 0px;border-style: dotted;border-color: --;filter:alpha(opacity=25);-moz-opacity:.25;opacity:.25;float:right;padding: 0.2em; margin: 1em;font-family:Verdana,Arial, Helvetica,Georgia;font-size: 24px;line-height:26px; text-align: right;"><span style="filter:alpha(opacity=75);-moz-opacity:.75;opacity:.75;">The </span><b> </b>current <br><b></b>pattern <br><b>of </b>the <br><b>globalisation process </b>is <br><b>leaving </b>something <br><b>very </b>crucial<span style="filter:alpha(opacity=90);-moz-opacity:.90;opacity:.90;"> behind</span></span>The current pattern of the globalisation process is leaving something very crucial behind, namely the multifaceted intellectual &#8216;wealth&#8217; and &#8216;natural resources&#8217; of Africa,&#8221; they add. &#8220;The beauty of a truly globalised world would lie in the diversity of the content contributed by all countries.</p>
<p>From this perspective, they say, the free flow of scientific articles must be pursued by developing countries, particularly SSA, with vigour. &#8220;African countries should as a matter of priority adopt collaborative strategies with agencies and institutions in the developed countries where research infrastructures are better developed, and where the quest for access to scientific publication is on the increase.&#8221;</p>
<p>They suggest that efforts could begin locally having found that even within single institutions in most African countries, access to scientific articles is very scant. &#8220;Local institutions should initiate local literature control services with the sole aim of making the content available to scientists,&#8221; they suggest.</p>
<p>Proper networking of institutions across a country could then ease access to scientific publications. One such initiative in Nigeria has started under the National University Commission&#8217;s NUNet Project but wider support from governments is necessary to build the infrastructure. Research oriented institutions could use their funds to grant free access to their readers, especially given that many already pay subscription fees for their readers in large amounts.</p>
<p>Meanwhile, can music bring <a href="http://www.intrahealth.org/open/">open relief to Africa</a>?</p>
<p><span class="Z3988" title="ctx_ver=Z39.88-2004&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&amp;rft.jtitle=International+Journal+of+Technology+Management&amp;rft.id=info:DOI/&amp;rft.atitle=Building+open+access+in+Africa&amp;rft.date=2009&amp;rft.volume=45&amp;rft.issue=1%2F2&amp;rft.spage=82&amp;rft.epage=101&amp;rft.artnum=&amp;rft.au=Williams+E.+Nwagwu&amp;rft.au=Allam+Ahmed&amp;bpr3.included=1&amp;bpr3.tags=Social+Science%2COther">Williams E. Nwagwu, Allam Ahmed (2009). Building open access in Africa <span style="font-style: italic;">International Journal of Technology Management, 45</span> (1/2), 82-101</span> I put in a request with the publishers for this paper to be made freely available, it is now so. You can download the PDF <a href="http://www.inderscience.com/www/pdf/ijtmv45n12_oainafrica.pdf">here</a>.</p>
<div id="crp_related"><h3>Related Posts:</h3><ul><li><a href="http://www.sciencebase.com/science-blog/online-health-in-the-developing-world.html" rel="bookmark" class="crp_title">Online Health in the Developing World</a></li><li><a href="http://www.sciencebase.com/science-blog/pubchem-making-chemical-information-open.html" rel="bookmark" class="crp_title">PubChem &#8211; Making Chemical Information Open</a></li><li><a href="http://www.sciencebase.com/science-blog/developing-health.html" rel="bookmark" class="crp_title">Developing Health</a></li><li><a href="http://www.sciencebase.com/science-blog/blog-action-day-on-poverty.html" rel="bookmark" class="crp_title">Blog Action Day on Poverty</a></li><li><a href="http://www.sciencebase.com/science-blog/open-access-scientific-publishing.html" rel="bookmark" class="crp_title">Open Access Scientific Publishing</a></li></ul></div><p><a href="http://www.sciencebase.com/science-blog/open-access-in-africa.html">Open Access in Africa</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
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		<title>Bird Flu Flap</title>
		<link>http://www.sciencebase.com/science-blog/bird-flu-flap.html</link>
		<comments>http://www.sciencebase.com/science-blog/bird-flu-flap.html#comments</comments>
		<pubDate>Wed, 25 Jun 2008 12:00:51 +0000</pubDate>
		<dc:creator>David Bradley</dc:creator>
				<category><![CDATA[Bird Flu]]></category>
		<category><![CDATA[medicine]]></category>

		<guid isPermaLink="false">http://www.sciencebase.com/science-blog/?p=1684</guid>
		<description><![CDATA[I&#8217;m not entirely convinced that bird flu (avian influenza) is going to be the next big emergent disease that will wipe out thousands, if not millions, of people across the globe. SARS, after all, had nothing to do with avians, nor does HIV, and certainly not malaria, tuberculosis, MRSA, Escherichia coli O157, or any of [...]<p><a href="http://www.sciencebase.com/science-blog/bird-flu-flap.html">Bird Flu Flap</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
]]></description>
			<content:encoded><![CDATA[<p><img style="float:left;width:120px;padding-right:4px;padding-top:5px;" src="http://www.sciencebase.com/science-blog/./images/bird-flu-duck.jpg" alt="Bird flu duck" />I&#8217;m not entirely convinced that bird flu (avian influenza) is going to be the next big emergent disease that will wipe out thousands, if not millions, of people across the globe. SARS, after all, had nothing to do with avians, nor does HIV, and certainly not malaria, tuberculosis, MRSA, Escherichia coli O157, or any of dozens of virulent strains of disease that have and are killing millions of people.</p>
<p>There are just so many different types of host within which novel microbial organisms and parasites might be lurking, just waiting for humans to impinge on their marginal domains, to chop down that last tree, to hunt their predators to extinction, and to wreak all-round environmental habitat on their ecosystems, that it is actually only a matter of time before something far worse than avian influenza crawls out from under the metaphorical rock.</p>
<p>In the meantime, there is plenty to worry about on the <a href="http://www.sciencebase.com/bird-flu-symptoms.html">bird flu</a> front, but perhaps nothing for us to get into too much of a flap over, just yet.</p>
<p>According to a report on Australia&#8217;s ABC news, researchers have found that the infamous H5N1 strain of bird flu (which is deadly to birds) can mix with the common-or-garden human influenza virus. The news report tells us worryingly that, &#8220;A mutated virus combining human flu and bird flu is the nightmare strain which scientists fear could create a worldwide pandemic.&#8221;</p>
<p>Of course, the scientists have not discovered this mutant strain in the wild, they have simply demonstrated that it can happen in the proverbial Petri dish.</p>
<p>Meanwhile, <em>bootiful</em> UK turkey company &#8211; Bernard Matthews Foods &#8211; has called for an early warning system for impending invasions of avian influenza. A feature in Farmers Weekly Interactive says the company is urging the government and poultry industry to work together to establish an early warning system for migratory birds that may carry H5N1 avian flu. &#8220;Armed with this knowledge, free range turkey producers would be able to take measures to avoid contact between wild birds and poultry.&#8221; That&#8217;s all well and good, but what if a mutant strain really does emerge that also happens to be carried by wild (and domesticated birds) or, more scarily by another species altogether? Then, no amount of H5N1 monitoring is going to protect those roaming turkeys.</p>
<p>While all this is going on, the <a href="http://www.washingtonpost.com/wp-dyn/content/article/2008/06/11/AR2008061101265_pf.html">Washington Post</a> reports that the Hong Kong authorities announced Wednesday (June 10) that they are going to cull poultry in the territory&#8217;s retail markets because of fears of a dangerous bird flu outbreak. H5N1 virus was detected in chickens being sold from a stall in the Kowloon area and 2700 birds were slaughtered there to prevent its spread. In closely related news, the <a href="http://www.iht.com/articles/ap/2008/06/11/asia/AS-GEN-NKorea-Bird-Flu.php">International Herald Tribune</a> has reported that there has been an outbreak of bird flu in North Korea. &#8220;Bird flu has broken out near a North Korean military base in the first reported case of the disease in the country since 2005, a South Korean aid group said Wednesday.&#8221; But, note, &#8220;since 2005&#8243;, which means it happened before, and we didn&#8217;t then see the rapid emergence of the killer strain the media scaremongers are almost choking to see.</p>
<p>Finally, the ever-intriguing Arkansas Democrat Gazette reported, with the rather uninspiring headline: <a href="http://www.nwanews.com/adg/Business/228358/">Test shows bird flu in hens</a>. Apparently, a sample from a hen flock destroyed near West Fork, Arkansas, tested positive for avian influenza. A little lower down the page we learn that the strain involved is the far less worrisome H7N3. So, avian influenza is yet to crack the US big time. Thankfully.</p>
<div id="crp_related"><h3>Related Posts:</h3><ul><li><a href="http://www.sciencebase.com/science-blog/bird-flu-in-the-us.html" rel="bookmark" class="crp_title">Bird flu reaches the US</a></li><li><a href="http://www.sciencebase.com/science-blog/bird-flu-in-britain.html" rel="bookmark" class="crp_title">Bird Flu in Britain</a></li><li><a href="http://www.sciencebase.com/science-blog/h5n1-in-the-uk.html" rel="bookmark" class="crp_title">H5N1 in the UK</a></li><li><a href="http://www.sciencebase.com/science-blog/double-your-money-in-bird-flu-lottery.html" rel="bookmark" class="crp_title">Double your Money in Bird Flu Lottery</a></li><li><a href="http://www.sciencebase.com/science-blog/needle-free-bird-flu-vaccine.html" rel="bookmark" class="crp_title">Needle free bird flu vaccine</a></li></ul></div><p><a href="http://www.sciencebase.com/science-blog/bird-flu-flap.html">Bird Flu Flap</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
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		<title>Flu Clinic Widget</title>
		<link>http://www.sciencebase.com/science-blog/flu-clinic-widget.html</link>
		<comments>http://www.sciencebase.com/science-blog/flu-clinic-widget.html#comments</comments>
		<pubDate>Wed, 17 Oct 2007 15:00:43 +0000</pubDate>
		<dc:creator>David Bradley</dc:creator>
				<category><![CDATA[Bird Flu]]></category>
		<category><![CDATA[Health]]></category>
		<category><![CDATA[vaccines]]></category>

		<guid isPermaLink="false">http://www.sciencebase.com/science-blog/flu-clinic-widget.html</guid>
		<description><![CDATA[
Is flu vaccination a shot in the dark? Regular readers will recall the recent debate on multiple vaccines, statistics, and risk we had here in September. I also have rather close personal experience of one of the risks associated with having the annual flu vaccine &#8211; Guillain-Barr&#233; Syndrome (GBS). This autoimmune disorder is purportedly associated [...]<p><a href="http://www.sciencebase.com/science-blog/flu-clinic-widget.html">Flu Clinic Widget</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
]]></description>
			<content:encoded><![CDATA[<p><img style="float:left;width:120px;padding-right:4px;padding-top:5px;" src="http://www.sciencebase.com/images/flu-shot.jpg" alt="Flu shot" /></p>
<p>Is flu vaccination a shot in the dark? Regular readers will recall the recent <a href="http://www.sciencebase.com/science-blog/mmr-and-statistics.html">debate on multiple vaccines</a>, statistics, and risk we had here in September. I also have rather close personal experience of one of the risks associated with having the annual flu vaccine &#8211; <a href="http://www.mayoclinic.com/health/guillain-barre-syndrome/DS00413">Guillain-Barr&eacute; Syndrome</a> (GBS). This autoimmune disorder is purportedly associated with a respiratory or gastrointestinal tract infection although there is a statistical risk that <a href="http://www.mayoclinic.com/health/guillain-barre-syndrome/DS00413/DSECTION=4">connects it to the flu vaccine</a>. A close relative of mine developed GBS symptoms about six weeks after having the flu jab last December and has not yet fully recovered. GBS support groups recommend she not have the vaccine again.</p>
<p>So, it is with mixed feelings that I read an email from Charles Forsyth (a public relations professional at www.btstrategies.com apparently working for the <a href="http://www.lungusa.org/">American Lung Association</a>). Charles is helping the ALA raise awareness of the importance of getting an influenza vaccination at this time of year. He explains that part of the campaign involves persuading bloggers and other website owners to add a widget to their site. The widget helps readers find a local flu clinic quickly and easily where they can be vaccinated.</p>
<p>You can try the widget here http://www.flucliniclocator.org and download it to add to your site. Just enter your zip code to find clinics in your area and make an appointment. You could use it to find a clinic for elderly or infirm friends or relatives too or others in high-risk categories, such as asthma sufferers, and those on immunosuppressant drugs.</p>
<p>Tragically, influenza kills about 36,000 people each year in the US, Charles tells me, and requires another 200,000 to be hospitalized. Most of these deaths are preventable by getting a simple flu shot each fall.</p>
<p>The following groups are considered at higher risk than the general population</p>
<ul>
<li>People  who are 50 years of age and older
<li>Women who will be pregnant during influenza season
<li>Young children 6 to 59 months of age [Not sure what changes at 59 months, presumably they just mean under fives]
<li>People with chronic medical conditions such as asthma, emphysema, chronic bronchitis, TB, CF, heart disease, kidney problems, diabetes, and severe anaemia
<li>People who have diseases or having treatments that depress immunity
<li>Caregivers of those at risk
</ul>
<p>Charles suggested I add the widget to the Sciencebase bird flu symptoms page, but I think that would be a little irresponsible, given that a vaccine against human influenza will most likely provide absolutely no protection against an impending bird flu epidemic. Instead, I&#8217;ve added it to my seasonal page on <a href="http://www.sciencebase.com/How_to_avoid_colds_and_flu.html">how to avoid colds and flu</a> in the first place. This page rears its ugly head at this time of year on an annual basis, so it&#8217;s as good a place to slot the widget as any. I should emphasize though, that if you have any concerns about the protective efficacy of vaccination or the risks associated with the flu jab you should discuss them with your GP.</p>
<p>Oh, and if you think you have flu or a bad cold, don&#8217;t spread it around, stay at home.</p>
<div id="crp_related"><h3>Related Posts:</h3><ul><li><a href="http://www.sciencebase.com/science-blog/mmr-and-statistics.html" rel="bookmark" class="crp_title">MMR and Statistical Manipulation</a></li><li><a href="http://www.sciencebase.com/science-blog/needle-free-bird-flu-vaccine.html" rel="bookmark" class="crp_title">Needle free bird flu vaccine</a></li><li><a href="http://www.sciencebase.com/science-blog/preventing-bird-flu.html" rel="bookmark" class="crp_title">Preventing the Spread of Bird Flu</a></li><li><a href="http://www.sciencebase.com/science-blog/swine-flu.html" rel="bookmark" class="crp_title">Swine Flu</a></li><li><a href="http://www.sciencebase.com/science-blog/flu-mechanics.html" rel="bookmark" class="crp_title">Flu mechanics</a></li></ul></div><p><a href="http://www.sciencebase.com/science-blog/flu-clinic-widget.html">Flu Clinic Widget</a> is a post from: <a href="http://www.sciencebase.com/science-blog">Sciencebase Science Blog</a></p>
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