Teatime

Chocolate teapotI commented on a post on the Bad Language blog, produced by my good friend Matthew Stibbe, earlier this week. He was waxing lyrical about cutting power consumption in his SOHO and mentioned how he prefers to brew tea with freshly drawn water. I pointed out that while this may have benefits it would actually increase his kettle limescale problems through the addition of extra calcium and magnesium ions. The effect will be negligible, but if we are adding up every single kilowatt-second then it could make a difference. Of course, brewing tea is not environment friendly in the first place and we should all really be drinking trapped dew under a hessian bivouac, or somesuch.

Anyway, Matthew immediately followed up my comment with a defence of using freshly drawn water for making a cuppa. He’s a man after my own heart. I’ve done this once or twice in the past and it exemplifies precisely how blogs are if nothing else a dialogue (please don’t prove me wrong by not commenting on this post…)

I’d better qualify my boiling/reboiling comment on his blog. Chemically speaking the difference between starting with freshly drawn water each time will be a simple matter of formation of insoluble calcium and magnesium salts. With freshly drawnn water you’re adding new metal ions, which will effectively add to your limescale. However, the de-hardening of hard water by heating is not a perfect process so some will be retained in the beverage once you pour over tea leaves, but the actual balance depends on how soft or hard is your water supply in the first place.

However, now that I’ve had a glass or two of vino (at the time of writing), it has also occurred to me that there are lots of other, organic, components in fresh tapwater, such as humic acids, and organochlorine compounds (possibly even fluorine compounds depending on where you live). These will be presumably be degraded and/or boiled off with the first boil to a degree. In the second boiling it is more likely that you will get rid of all these flavoursome ingredients from the water. So, perhaps there is something in the use of fresh water for the best cuppa, but it’s marginal given that any flavours in the water will essentially be overwhelmed by the flavour of the tea itself. It’s like worrying about the sounds they leave out when compressing a music file into mp3 format.

Meanwhile, the origins of tea lie in an attempt at “storing” water in Asia, so legend goes, and to protect it from contamination by pathogens (namely cholera, although they didn’t know this as the agent at the time). The polyphenolics and other materials in tea infused into the water are to a degree antimicrobial, but perhaps more importantly the simple act of boiling kills of the microbes quickly and succinctly without any recourse to chemistry.

In the “West”, the equivalent solution to the great clean water problem was the addition of fermenting fruits and the subsequent production of wine or beer depending on the region. It’s thought to explain why westerners have evolved an enzyme to break down alcohol and its metabolites whereas some Asians lack this enzyme system.

Given the choice between a freshly brewed cuppa, I know which I prefer, especially at this time of the evening…now where’s that corkscrew?

Accounting for Research

Accounting for scientists

How does one measure the worth of the science base? From the scientists’ perspective it is their bread and butter, or low-fat spread and rye biscuit, perhaps, in some cases. From industry’s standpoint, it is occasionally a source of interesting and potentially money-spinning ideas. Sometimes, it sits in its ivory tower and, to the public, it is the root of all those media scare stories. At worst, the science base is perceived as a huge drain on taxpayers’ money, especially when the popular press gets hold of ‘spiders on cannabis’ and the ‘scum on your tea’ as the lead science stories for the year!

For the government though, which more often than not is providing the funds for basic research, the science base is crucial to all kinds of endeavours: wealth creation, the development of fundamental science into practical technology, the demolition of those ivory towers and the mixing of scientists with the great industrial unwashed through collaboration. As such, governments try to ensure that the science they fund is accountable – to government, to its sponsors and to society and the public as a whole.

But, I come back to my first question. How does one measure the impact of basic research on society? If one went begging for funding for a new area in chemistry with no practical applications anywhere in sight, funding would likely be meagre. It can be dressed up, of course, natural product chemistry almost always has the potential for novel medicinally active compounds while even the most esoteric supramolecular chemistry could be the nanotechnology breakthrough we have been waiting for. You’ve seen and maybe even written the applications yourself. On the other hand, take any piece of genetics with the potential to cure some likely disease and the cash will usually roll in, at least relatively speaking.

So, what does quality mean when applied to scientific research? Was the discovery of the fullerenes quality science? Well, yes it obviously was in that it stirred up the chemistry and other communities and generated mass appeal for a subject that gets rather less of an airing in a positive light than certain other sciences. Fullerenes also provided some of the scientists involved with a Nobel Prize so someone in Sweden must have liked it.

But, if we were to apply any kind of standard criteria of usefulness to society we would be hard pushed to give it the highest score except only as a demonstration that fundamental science can still excite. After all, have you seen any real applications yet? I touched on the potential for medicinal fullerenes early in the fullerene rising star and it is probably unfair to single them out for accountability, especially as ultimately they inspired the carbon nanotubes. You might say that they are simply one of many examples of science as art. They allow us to visualise the world in a new way, they are beautiful – chemically, mathematically, physically.

The pressure is now on scientists to face up to some imposing questions as government-mandated requirements begin to come into effect. [This has become a moot point in the UK since this article was first aired, given funding cuts for big, esoteric science projects]. Efforts to make science accountable come with a massive burden of controversy and are hindered by the almost impossible task of measuring creative activities such as research. Added to this, accountability requires increasing levels of administration especially at times of formal assessment for the scientists themselves.

The careers of most scientists hinge on these assessments, in more ways than one, as the pressure on faculty pushes them in directions they may not naturally go, producing research papers just to satisfy the assessment process, for instance. This coupled with a general drive to bring science to the public – through media initiatives – and so demonstrate to people why science is important and why their money should be spent on it – just adds to the pressure.

However, despite the marketing-style talk of stakeholders, and the close industrial analogues, the shareholders, basic scientific research is not about customers and churning out identical components on a production line. There are usually no targets and no truly viable and encompassing methods to assess the quality of any part of the scientific endeavour. Ironically, this means the end-of-year bonus is something on which most scientists miss out, regardless of their successes. Science is the art, technology makes it pay, but some art is fundamental or avant garde and some finds its way on to advertising hoardings. Which do you prefer, fine art or glossy brochure?

By forcing basic science to become accountable in terms of product and efficiency there is the possibility that creativity and autonomy will be stifled. If done right, accountability can strengthen the relationship between research and society.

Measuring the socioeconomic benefits from specific scientific investments is tough. Basic research gets embodied in society’s collective skills, putatively taking us many more directions than we would otherwise have headed. As such, it can have a future impact on society at entirely unpredictable points in time. Who knows where that pioneering fullerene chemistry will have taken us by the end of this century?

Sir Harry Kroto, co-discoverer of the fullerenes told me in an interview once that, “Scientists are undervalued by a society that does not understand how outstanding someone has to be to become a full-time researcher.” Maybe the measure of science is in its beauty rather than its assessment scores.

A Wrench for Social Engineering

Social engineering attacks, what used to be known as a confidence, or con, tricks, can only be defeated by potential victims taking a sceptical attitude to unsolicited approaches and requests for privileged information and resources. That is the message that arrives from European researchers.

Most of us have received probably dozens of phishing messages and emails from scammers on the African continent seeking to relieve us of our hard-earned cash. Apparently, these confidence tricksters are so persuasive that they succeed repeatedly in hustling funds even from those among us with a normally cynical outlook and awareness of the ways of the world.

On the increase too are cowboy construction outfits and hoax double-glazing sales staff who wrest the life savings from senior citizens and so-called boiler room fraudsters who present get-rich-quick schemes so persuasively that thousands of unwitting individuals lose money totalling millions of dollars each year.

Con artists and hustlers have always preyed on greed and ignorance. As the saying, goes a fool and their money are easily parted. However, the new generation of social engineers, are not necessarily plundering bank accounts with promises of riches untold, but are finding ways to infiltrate sensitive databases, accounts, and other resources, using time-honoured tricks and a few new sleights of hand.

Now, Jose Sarriegi of the Tecnun (University of Navarra), in San Sebastian, Spain, and Jose Gonzalez, currently in the department of Security and Quality and Organizations, at the University of Agder, Norway, have taken a look at the concept of social engineering, and stripped it down to the most abstract level (International Journal of System of Systems Engineering (2008, 1, 111-127)). Their research could lead to a shift in attitude that will arm even the least sceptical person with the necessary social tools to spot an attempt at social engineering and stave off the attack with diligence.

Fundamentally, the researchers explain, social engineering is an attempt to exploit a victim, whether an individual or organization, in order to steal an asset, money, data, or another resource or else to make some resource unavailable to legitimate users in a denial of service attack or in the extreme instigate some terrorist, or equally destructive, activity.

Of course, a social engineering attack may not amount to a single intrusion, it could involve layer upon layer of deceptions at different places and on different people and resources. The creation of a sophisticated back-story, access to less sensitive resources, and targeting of the ultimate goal is more likely to be a dynamic process. This, the researchers suggest, means that looking for “heaps of symptoms”, as might occur in attempting to detect someone breaking into a computer system, is no longer appropriate and a dynamic response to a dynamic attack is more necessary now than ever before.

Recognising the shifting patterns of an ongoing and ever-changing social engineering attack means better detection of problems low in the metaphorical radar, the team suggests. Better detection means improved efficacy of security controls. The best defence is then to build, layer-by-layer, feedback loops that can catch an intruder at any of many different stages rather than relying on a single front-line defence that might be defeated with a single blow.

Latest on Spectral Lines

Spectral FloydThere have been 32 issues of my science news column on spectroscopynow.com since it was last officially called Spectral Lines, but I thought it was a nice name so occasionally resurrect it here when I highlight the latest research findings I cover on the site. It also gives me an excuse to re-use a logo I did in the early days of the site touting the line “David Bradley On Spec” (geddit?).

So this, week the first May issue is brought to you by the letter “F” with articles entitled: Fishing for amines, Fancy ants for arthritis, and Fixing chemotherapy. We also have, Rewiring brains therapeutically, Hybrid contact, and Boning up with Raman, but they don’t start with an “F” so required a separate sentence. Anyway…

Those fancy ants are perhaps not the first organism one would think to turn to for medical assistance, but researchers in Hong Kong and Japan have now used spectroscopy to study the chemical structures of various compounds extracted from Chinese medicinal ants that are thought to have anti-arthritic activity and be beneficial in treating hepatitis. There are lessons to be learned here, regarding the harvesting of traditional knowledge from folk medicine as well as yet another reason to try and conserve biodiversity the world over.

In Rewiring brains therapeutically, Edward Taub and colleagues at UAB use MRI scans to lay to rest once and for all the medical myth that the adult brain cannot grow new neurons. They show that a form of therapy, developed by Taub in the early 1990s for helping stroke patients recover use of paralysed limbs, so-called constraint induced (CI) therapy, really does induce a remodelling of the brain.

And in my Hybrid contact item, I discuss how early attempts to create protein-polymer hybrid materials often foundered because the mixed chemistry was simply not up to the task. Now, a UCB team has developed a new approach to hooking up natural proteins with synthetic polymers that could work with almost any protein and any polymer and could be used to develop new types of chemical sensor for medical diagnostics, quality control and environmental analysis. Related materials might also work as highly targeted drug-delivery systems, or even as the components of a future nanomachine.

Spicy Nanogoo

Nano Car (Photo by Y. Shirai/Rice University)Nanopaprika could be the key ingredient for spicing up the nanoscience and nanotechnologies communities. Site editor Andras Paszternak asked me to join just before the scientific social networking site passed the hot point of 500 members. Whether or not that nice round figure really is key to online science remains to be seen but there is certainly a buzz about the place.

I had rather hoped to kick off a lively debate on nanogoo and the media hype and parallel scare stories that have emerged since K Eric Drexler’s first proclamations about nanobots following on from Feynman’s famous room at the bottom lecture.

We’ve all read the grey goo headlines but we’ve also seen the hype regarding what nano has to offer. I often tell people it’s nothing special, just stuff that happens to be a few billionths of a metre in scale. If it’s not grey goo and it’s not the Drexlerian promise of a decade since, then where is modern nanoscience and when will it truly beecome nanotechnology?

I also asked the same question, in time-honoured fashion, of my LinkedIn contacts and have summarised responses here.

Liam Sutton, a Business Research Fellow at the University of Sheffield’s Polymer Centre and Technical Consultant at FaraPack Polymers had this to say: “Well, ‘nanoscience’ is such a broad area. After all, the term encompasses (as far as I understand it) anything physical with a characteristic length scale in the order of nanometres. So there are unpleasant stories to tell, like the discovery of penetration of the blood-brain barrier in rats by diesel smoke particles and, equally, there are billion-dollar nanotechnologies already out there like hard disk drives based on the giant magnetoresistance of synthetic nanoparticles.”

Suttons adds that the Sheffield answer to this sort of question is to direct people towards the Soft Machines blog of Richard Jones, who is Senior Strategic Advisor for Nanotechnology for the UK’s Engineering and Physical Sciences Research Council. “It’s a very well written and authoritative source on the place and direction of nanoscience and technology,” Sutton says.

Tim Harper, a (nano)Technologies Entrepreneur, says that, “Most of the hype seems to have shifted to Cleanteach (along with most of the hypers) so the picture is becoming a lot clearer. The technology is now emerging in a number of areas although the majority of ‘nano’ is still nanoscience.” He points readers to a couple of white papers dealing with this on the Cientifica website. Harper is VP Business Development at PlayGen, Contributing Editor at The Real Nanotech Investor, and an Editorial Board member on NANO, published by World Scientific.

Philippe Bradley (no relation), an Oxford Uni student and founder of CivSpark.com, which is currently in development said: “Nanobiotechnology seems to be a very exciting field at the moment – because, behind the opaque name, it’s basically the science of beating nature at its own game. The body is full of amazing machines, nanoscience seeks to modify or emulate them – or create completely new machines that perform similar functions.”

“Nanotechnology, as far as theory goes for technology in the nano domain, exists very much today,” adds Santanu Ganguly, at Network Engineer at Swisscom. He points to quantum dots, electron spin dynamics, atomic clusters etc, which all lie under the nanoscience banner. “In terms of actually seeing the basic science become a ‘true’ technology, certain challenges still remain,” he adds, “most of which has to do with quantum interactions. The most promising part so far, from the point of view of applications and control over quantum interactions, seems to be quantum optics and manipulation of DNA.”

You can read other responses and follow additional resources via the LinkedIn answers page. What are your thoughts on nano hype and nano fears? Are we set to drown in nanogoo at some point in the future or will nano save the world? Surely, with all this paprika around it’s time for a pep talk…

Arty with a Capital F and the Myth of Absinthe

ThujoneI’ve got a bottle of absinthe, at the back of a shelf in our store-cupboard. Unopened this bottle of green uber-liquor languishes untested awaiting an appropriate occasion when a drink containing 70 percent alcohol (140 proof) is required. It’ll probably be the day our cat dies…

Anyway, while my bottle languishes, new research suggests that the psychedelic mythology surrounding this exotic green aperitif and its purported mind-altering effects are due to nothing more than the high concentration of alcohol, plain, old EtOH like you find in wine, beer, and spirits.

The likes of van Gogh, Degas, Toulouse-Lautrec and Picasso quaffed large quantities of the stuff in the hope that its claimed hallucinogenic effects would enhance creativity. However, analysis of the contents of old bottles of the stuff by scientists in Europe and the US show that there were no psychotropic agents contained in the spiritual brew. Moreover, they found negligible quantities of thujone, a bicyclic compound with a three-membered ring that was widely believed responsible for absinthe’s effects. The results are detailed in the mid-May issue of the Journal of Agricultural and Food Chemistry.

The results brought to mind a high-school dance, when one particularly boastful and eccentric classmate (named Keith) was duped by some older boys into smoking common or garden tea leaves in the mistaken belief that they’d given him a spliff and then swaggered brazenly around the school hall under flashing disco lights claiming everything was, “Sooooo cooooooo, maaaaaan! I can almost picture van Gogh swigging the green grog, slicing off an ear and being endowed with a similar swaggering disposition (albeit in Dutch and with a large wad of surgical dressing pressed to the side of his head).

Absinthe took on legendary status in late 19th-Century Paris among bohemian artists and writers. They believed it expanded consciousness with psychedelic effects and called it the “Green Fairy” and the “Green Muse”.

The laboratory tests, unfortunately for Bohemians everywhere, found no compound other than ethanol that could explain absinthe’s effects nor its potent toxicity. “All things considered, nothing besides ethanol was found in the pre-ban absinthe samples that was able to explain the syndrome of absinthism,’ the researchers say. And, there I was hoping for a good drowning of sorrows when our cat has used him his full nonet of lives.

Incidents and Accidents

A friend of mine who worked in a biotech lab in Europe suffered a bout of what she thought was hayfever this year…snuffling and runny nose, itchy and sore eyes, the usual thing…except this was in February! She took a few days sick leave – it was that bad – and the symptoms subsided. Until she went back to work, where she started up again her earlier experiment – enzymatic chemical synthesis.

The devastating result was far worse than the snuffles she had suffered before his sick leave – her neck and face went bright scarlet, she started shaking and collapsed gasping for air. Anaphylactic shock was the diagnosis. She had to leave her job although the lab in question has implemented very strict protein-powder handling control systems, it’s the kind of accident that is almost impossible to predict and potentially more common than ever.

There are more unusual accidents. In December 1999, Emory University in Atlanta paid out $66,400 in fines and changed its procedures following the death two years earlier of primate researcher Elizabeth Griffin who contracted herpes B after being hit in the eye with fecal material, urine, or saliva while putting a rhesus monkey in a cage at the Yerkes Regional Primate Center.

A small-scale lab accident may involve someone mixing something and getting an unexpected exothermic or explosive reaction. The results often reach the community by word of mouth and through a note in the literature. For instance, Toshi Nagata of the Institute for Molecular Science, Okazaki, Japan, recently reported an accident while following a literature procedure published ten years ago. The chemical preparation involved synthesising a brominated bipyridine (Can. J. Chem. [69, 1117 (1991)] but instead of using standard quantities Nagata’s team had scaled it down to a tenth. While they were purifying the product, the 100 ml reaction flask exploded violently injuring one of the team in the arm. Nagata suspects that the problem lay in the formation of a peroxide by-product that would have been less concentrated on a larger scale. Nagata, wrote to Chemical & Engineering News, the flagship journal of the American Chemical Society, saying, “I do not intend to blame the authors for not describing the danger, but all chemists should be aware that this procedure could be dangerous.”

Guidelines and regulations are all well and good but what about insidious threats like this? Such incidents beggar the question of how might they be predicted. Should there be stricter guidelines for the way procedures are described in the literature? If so, what might they be and how would they be applied?

In 1995, a seemingly small-scale spill of hydrofluoric acid killed a technician in Australia. He died from multi-organ failure two weeks after the incident. Several factors contributed to his unfortunate death, according to the official report – he was alone, wearing only rubber gloves and sleeve protectors but nothing covering his lap, He was working in a crowded fume hood. The lab had no emergency shower, nor any calcium gluconate gel antidote available. The lessons may be obvious. But, accidents happen to even the most experienced of scientists.

The slow death that befell Dartmouth chemist Karen Wetterhahn when she was exposed to a few drops of the highly toxic dimethylmercury in August 1996 took several months to kill her. Although Wetterhahn was wearing latex gloves this compound rapidly penetrated them and was absorbed through her skin. Ironically, she was at the time using dimethylmercury to examine the effects of toxic metals, such as chromium, on human cells. While, in October this year, Michal Wilgocki of the University of Wroclaw in Poland, a chemistry professor of thirty years experience, died after an explosion in his laboratory. Fire-fighters have suggested the accident may have happened while Wilgocki was drying unstable perchlorates.

Lab safety

So, who ensures that rules and regulations are adhered to in order to prevent accidents? Who makes sure the fume-cupboards and filters are up to a high enough standard and the reagent bottles are stored safely?

According to Jim Kaufman of the Laboratory Safety Institute (LSI), “There are three levels of responsibility. First is Management. Safety is their responsibility. Preventing accidents and injuries is their responsibility. If you manage others, you are responsible for their health and safety. You have to enforce the rules,” he explains. “Second is the Chemical Hygiene Officer and the lab’s safety committee. They are advisors and recommenders. Third is everyone. Everyone needs to be responsible for health and safety. Follow the rules, report accidents, injuries, and unsafe conditions.”

Organizations such as LSI – formerly the Laboratory Safety Workshop a not-for-profit center providing a focus for safety in science education, work, and our everyday lives. The LSI makes several assumptions about the level of knowledge of those “in the know”, they say “You know the hazards, you know the worst things that could happen, you know what to do and how to do it if they should happen, you know and use the prudent practices, protective facilities, and protective equipment needed to minimize the risks.” But, when the pressure is on, there can always be a proverbial chance for inadvertent roller skating down the stairs to wreck the best of intentions.

With the ubiquity of the Internet, every lab now can have instant online access to its health and safety rules and guidelines. The Biological Safety Policy of Washington State University at Pullman is a typical example of the materials freely available. One aspect of safety that is often ignored is that while personal protective equipment (PPE), such as eye protection, lab coats and fume hoods are essential, there is an alternative and that is to better design an experiment so that the hazards are controlled without resorting to PPE. If safer materials or processes are available or the whole experiment can be enclosed then that reduces risks.

There are numerous career opportunities in the field of safety. And quite a few glamorously named positions available, many of which are fairly synonymous job description minutiae aside. There are process/equipment safety engineers and technicians, laboratory safety officers, environmental protection agents, industrial (and chemical) hygienists, environmental, safety and health specialists, occupational health specialists and many others.

Most of these positions require at least a Bachelor’s degree in a technical subject, usually chemistry, biology, engineering, or physics, and it is, of course, possible to graduate in Industrial Hygiene or the related Occupational Safety too. One important aspect of many of these positions is that they usually require that the jobholder can physically wear appropriate personal protective equipment (PPE) and be capable of functioning while wearing respiratory protection. Which precludes some applicants on medical grounds.

An experienced industrial hygienist might work within an institute’s Occupational and Environmental Safety Office, for instance, and be responsible for coordinating support for the various laboratories, and ensuring employees, students, visitors, (patients, if they are working in a hospital), and the surrounding environment are protected.

Laboratory eye protection

Jason Worden has just completed his first year as a Laboratory Safety Technician at the University of Idaho, and has enjoyed the experience so far. “I work at a University in the Environmental Health & Safety Office,” he says, “My job includes surveying/inspecting labs on campus and testing and maintaining safety equipment. Another part of my job includes Radiation Safety duties as well as responding to Hazardous Material Emergencies and general office duties.”

There are important differences between the various job descriptions though, for instance, a safety engineer deals with protection of people and property from injury and damage investigating incidents. Whereas an industrial hygienist may be looking at protecting people from more insidious threats, injuries and illnesses that come about because of exposure to chemical agents or materials that may not be such an obvious hazard as a boiling vat of solvent outside a fume hood.

Jay Jamali is Environmental Health & Safety Director at Enviro Safetech Incorporated, a San Jose based company http://www.nullenvirosafetech.com. So, what routes are there into safety? “I have a client that went from researcher to safety specialist in a biotech company,’ says Jamali. “In other cases the safety staff have no background in biotech.” He adds that the position of “safety officer” is usually dependent on size of an organization or institute. “Smaller organizations assign safety to multiple site personnel,” he explains, “some doing chemical hygiene plan, same radiation safety, some bloodborne pathogen safety, some laser safety, some doing the personal protective equipment and some the lab safety.” On the other hand, outside contractors, such as Enviro Safetech, can take on the entire safety support operation on an as needed basis.

Bill Paletski of the Pennsylvania Technical Assistance Program (PENNTAP) points out that “flexibility and diversification is your key to beginning a career and improving it in the field of safety.” He suggests that without, belittling education, “Degree after Degree will not help, getting your feet wet is a good start.”

Many countries have regional safety departments that also inspect laboratories while every university should have a safety officer or section. Companies are bound by law to ensure the safety of their staff and visitors to their labs. Pay with a government agency, such as OSHA or EPA, is generally not as high as with a permanent position within an organization but they do offer good experience and training, according to Jamali. On the whole though pay is usually commensurate with experience, degrees and initials.

“The work is very addictive,” Jamali enthuses, “and very few leave the field after they get in because it gets under your skin.” He adds, that, “The key to success is to be a generalist, specialize in one of the three [main] fields and be an expert in at least two topics in your specialty.”

There are many specific problems that have not previously been such a concern in lab safety. Bio and chemical terrorism. Post 9-11, safety issues have been brought into sharp relief. Although most institutions are carrying on essentially as normal, security will ultimately impact on working practices in laboratories around the world. According to a spokesperson for Cornell University, “We’re still discussing all of this at various levels and there aren’t any clear answers. The one place that’s definitely involved is the College of Veterinary Medicine, where research on anthrax has been ongoing for years.”

Merle Schuh is a chemist at a small college – Davidson in North Carolina. He reckons in terms of the safety of faculty and students, “We have not instituted any new security measures or management procedures as a result of the increased threat of terrorism. We have always been conscious of safety considerations and lab and building security, and our present activities and procedures are deemed adequate,” he told me. “Since we are a small college, most students and faculty recognize each other, and any strangers to the chemistry building and other science buildings during daylight hours would generally be noticed.”

Working down a mine or on the high-seas, one might anticipate a real sense of danger when applying for the job, it might even be one of the thrills of the chase, but perhaps with the exception of those delving into active volcanoes or deep beneath the waves most researchers do not actively seek out danger.

Instructors at colleges and universities have a duty to emphasize and teach safety to their students. Proper education leads to awareness of safety issues and self motivation for their personal safety and the protection of others. “By the time science students graduate,” says Schuh, “ideally their conscientiousness about safety issues should be as well developed as their skills in doing laboratory work.” These days, not even the smallest or most ill-equipped lab has an excuse for failing to do its best to keep its researchers safe. But, still, in real life there is no safety net.

A version of this feature article by David Bradley first appeared in his careers column on BioMedNet.

Biomonitors

Autumnal grasses

Keeping a weather eye on atmospheric pollution is a large-scale, costly and time-consuming activity. However, there just happens to be a vast network of self-contained, self-powered units around the globe that can respond to the presence of toxins, radioactive species, atmospheric particulates and other materials in the environment and could be used to build up a local, national or international picture of environmental conditions – the world’s plants, mosses, and lichens.

In a forthcoming special issue of the International Journal of Environment and Pollution (2008, Volume 32, Issue 4), researchers from various fields explain how living organisms can be used to track the dispersal of atmospheric pollutants, particulates, and trace elements. They also explain how plants and other so-called biomonitors have been validated across the globe.

Writing in an editorial for the IJEP special issue chemist Borut SmodiÅ¡, a senior research associate at the Jožef Stefan Institute, in Ljubljana, Slovenia, explains how biomonitoring can be used in environments where a technological approach to monitoring is not only difficult and costly but may be impossible. “Biomonitoring allows continuous observation of an area with the help of bioindicators, an organism (or part of it) that reveals the presence of a substance in its surroundings with observable and measurable changes (e.g. accumulation of pollutants), which can be distinguished from the effects of natural stress.”

SmodiÅ¡ points to numerous other advantages of biomonitoring: “Simple and inexpensive sampling procedures allow a very large number of sites to be included in the same survey, permitting detailed geographical patterns to be drawn. Biomonitoring can be an effective tool for pollutant mapping and trend monitoring in real time and retrospective analysis,” he says.

While any organism might be used as a biomonitoring agent, Smodiš points out that mosses and lichens, which lack root systems, are dependent on surface absorption of nutrients. This means that they accumulate particulates and dissolved chemical species from their surroundings rather than from the soil and so could be more appropriate biomonitors for atmospheric pollutants.

In 1998, the International Atomic Energy Agency part of the United Nations, started a Coordinated Research Project on biomonitoring. Several papers in the special issue of IJEP detail methodologies, case studies and other aspects of various projects within this initiative and point to future avenues that might be explored.

Bristling beech leaves

In the paper “Atmospheric dispersion of pollutants in Sado estuary (Portugal) using biomonitors”, Maria do Carmo Freitas of the Instituto Tecnológico e Nuclear Reactor, in Sacavém, Portugal, and colleagues used instrumental neutron activation analysis (INAA) and proton-induced X-ray emission (PIXE) to investigate pollutant levels in epiphytic lichens. They found that temperature and humidity had a more prominent effect on pollutant accumulation than wind direction or rainfall levels, which could affect the interpretation of other biomonitoring results.

Ni Bangfa of the China Institute of Atomic Energy, Beijing, and colleagues in their paper “Study on air pollution in Beijing’s major industrial areas using multielements in biomonitors and NAA techniques” used NAA to analyze three types of plant leaves from Chinese white poplar, arborvitae, and pine needles. They found that northeast Beijing is a clean area while southwest is relatively polluted.

In “Biomonitoring in the forest zone of Ghana” B.J.B. Nyarko of the Ghana Atomic Energy Commission and colleagues studied the distribution of heavy metals in agricultural, industrial and mining areas in the first survey of its kind in Ghana using lichens as biomonitors. They found that the area around gold mining regions were most heavily polluted, with arsenic, antimony, and chromium while industrial sites had raised levels of aluminum, iron, and titanium. Farming regions were much less affected by heavy metal pollutants, as one might expect.

H.Th. Wolterbeek of the Delft University of Technology, Delft, the Netherlands in ” Large-scale biomonitoring of trace element air pollution: local variance, data comparability and its relationships to human health” used biomonitoring data to determine air concentrations and metal deposition and discussed how such studies might be used in the future to correlate pollution with human health issues. Other researchers including Bernd Markert of International Graduate School Zittau, Zittau, Germany, Eiliv Steinnes of the Norwegian University of Science and Technology, in Trondheim, and their respective teams also further validated the potential of biomonitoring approaches to pollution.

Mosses lichens

While biomonitoring techniques are improving rapidly and researchers are quickly validating results at the local level, Smodiš points out that there is no single species that could be used on the global scale. Moreover, different weather conditions around the globe mean that techniques are not necessarily comparable. With that in mind, environmental sensor manufacturers may rest assured that there is still a market for their instrumentation despite the best efforts of the mosses and lichens.

Taking the P (and the N)

SpirulinaUrine is a problem. Huge volumes are flushed, with fresh water, into the world’s sewage systems and then enormous volumes of yet more water are used to treat the waste along with solids. However, writing in a forthcoming issue of the Inderscience publication, International Journal of Biotechnology (2008, 10, 45-54), fellow journalists can email me if they want an advance copy of the paper) researchers in China and Russia describe how microbes could be used to convert liquid urine into a phosphorus and nitrogen rich biomass for use as feed, fertilizer and fuel.

Bioengineer Hong Liu of Beijing University of Aeronautics and Astronautics and colleagues Chenliang Yang, Ming Li, and Chengying Yu are working with Gurevich Yu, of the Russian Academy of Sciences, Siberian Branch, in Krasnoyarsk, to develop a more environmentally benign and potentially useful method for handling urine.

The researchers point out that the direct discharge of urine into lakes and rivers causes eutrophication because of the high levels of phosphorus and nitrogen. Treating human urine to make it safe to discharge into water is difficult and produces large amounts of waste by-product because urine is a complex mixture of compounds.

The researchers have now turned to the blue-green alga, Spirulina platensis, well-known, but controversial, as a health food supplement with claims of beneficial effects on cholesterol levels and blood pressure. Advocates also point to clinical evidence of benefits in treating malnourishment and anaemia in children with and without HIV, in protecting the heart from the toxic effects of the anticancer drug doxorubicin in chemotherapy, and even in preventing hay fever.

Spirulina platensis, now classified as Arthrospira (Spirulina) platensis (Nordstedt) Gomont does indeed contain several vitamins and minerals in large quantities, has a high protein content, and contains just 5-6% of good quality fat. Previous researchers have shown that this alga can grow on nitrogen-derived from urea (the nitrogen-containing component of urine) to release oxygen and produce solid biomass as it does so.

Liu and colleagues have now optimized the alkalinity of the fermentation mixture of Spirulina platensis to pH 9.5 as well as determined the best urine dilution ratio for most rapid growth. They warmed the brew to between 28 and 30 Celsius and bathed it in red and green light from an array of light-emitting diodes (LEDs). This stimulated metabolic activity. They were able to convert 99.99% of urine samples at the optimum dilution into solid biomass using Spirulina.

“Our future focus will be to make Spirulina platensis consume the nutrient component more quickly and to obtain more biomass,” the researchers say. They add that, “Spirulina platensis can be used as fertilizer, bait, and even a food and health product, is of great economic value.”

There could be a large market for urine-made Spirulina as an agricultural fertilizer or fish bait but perhaps this particular production method will not suit health food advocates. In fact, I’d go so far as to say they really are taking the P.

Research Blogging IconYang, C., Li, M., Yu, C., Yu, G., & Liu, H. (2008). Consumption of nitrogen and phosphorus in human urine by Spirulina platensis International Journal of Biotechnology, 10 (1) DOI: 10.1504/IJBT.2008.017987

Interview with Egon Willighagen

Egon Willighagen

Most of you who orbit the chemical blogosphere will be well aware of Egon Willighagen’s efforts in helping us build the chemical web. Willighagen is a post-doc at the Wageningen University & Research Center in the Netherlands and cites open source programming as his main hobby.

He runs a chemical blog and founded the all-encompassing Chemical Blogspace (elementally designated Cb). For this month’s Reactive Profile, I asked him about his work, the next big discovery, and about the highs and lows in running Cb.

You can read the complete interview in the April issue of Reactive Reports.

Also on offer in RR this month:

Super Insulators – Superconductors, materials with zero electrical resistance, have been known for decades, but their counterpoint materials, the superinsulators, could transform materials research and electronics design.

Gator Aid – Biochemist Mark Merchant of McNeese State University in Lake Charles, Louisiana, has investigated a range of proteins found in gator blood that might one day be used to fight serious infections.

Fake Bird Flu Drugs – International health organizations are lying in wait for the emergence of a form of avian influenza that could spread between people and lead to a global epidemic, killing millions.

More reactive chemistry…