Heptastic science news

  • The full list: The Twitter 100 – Its 200 million users share 110 million messages a day – and if you don't know who rules the twittersphere, you don't understand the 21st-century world. This guide is a definitive who's who of the UK's tweet elite. Although for some reason they included me on the list (at #47, same as Armando Ianucci).
  • Why haven’t we cured cancer yet? – How many times have you been asked this question, how many times have you asked this question yourself? The answer boils down to the fact that cancer is not a single disease, it's hundreds of different diseases. Asking that question is like asking, "why haven't we cured viral infection?" or "why haven't we cured car accidents?". Even if we can cure one type effectively, there are hundreds of other types to deal with. Even the umbrella term "breast cancer" belies the fact that there are many different types of disease that lead to malignancy in breast tissue.
  • Recycling carbon – Technologies that can use carbon dioxide as a chemical feedstock are high on the agenda in the face of rising atmospheric levels of the greenhouse gas. A novel iron-based catalytic process studied using inductively coupled plasma (ICP) atomic emission spectrometry shows how carbon dioxide can be converted into the industrially useful formic acid at an 80% yield. Formic acid might also be used as a fuel cell fuel. The metal oxide by-product is readily reduced using glycerin derived from renewable sources releasing lactic acid, which could be used for biopolymer production.
  • Feverish research – There is neither vaccine nor cure for the Ebola and Marburg viruses, which cause fatal haemorrhagic fever in humans. However, a new NMR spectroscopic study by US researchers scientists has led to the discovery of a family of small molecules that apparently bind to the outer protein coat of the virus and halt its entry into human cells, so offering the possibility of an antiviral medication against the disease.
  • Structural biologists catch the pulse – Researchers have discovered that ultra-short X-ray pulses can produce exquisite measurements at the molecular level of biological objects by grabbing a "snapshot" just before the sample succumbs to radiation damage.
  • Enzymes against cocaine – The interaction of novel substrates for the enzyme butyrylcholinesterase (BChE) and mutants have been investigated using computational and correlation studies. The insights revealed could improve our understanding of how this enzyme, which metabolizes cocaine, might be modulated in drug therapy and the development of anti-addiction drugs.
  • Spectroscopy & Separation Science – We need the page to get 25 members so that we can switch to a nice short URL…please "like" the page.

From David Bradley Science Writer – seven science selections

Even more science news

Science news snippets from the net meanderings of David Bradley

  • Sir David King on climate change – King said, “We hear enough from the climate change skeptics that I have to repeat some fundamentals that you’ve probably heard before.” Fifty-five million years ago, atmospheric CO2 concentrations stood at about 1,000 ppm and global temperatures were much higher and ocean levels were about 110 m higher than they are today. Large mammals developed on Antarctica because the climatic conditions on all of the other continents were inhospitable to such development.<br />
    <br />
    In the past 500,000 years, every ice age was characterized by atmospheric CO2 concentrations around 200 ppm; every short interglacial period by concentrations around 285 ppm, which was also the preindustrial atmospheric concentration of CO2. Today, the atmospheric CO2 concentration stands at 389 ppm and is rising by 2 ppm per year.<br />
    <br />
    “Could we get back to 1,000 ppm CO2 by burning all of the fossil fuel on Earth?” King asked. “Yes.”
  • Save the Forensic Science Service – Brits are starting to get a feel for what it must have been like for US scientists under Dubya with the hacking and slashing of science that the current unelected UK government is doing. Petitions might help…
  • Switching to a standing desk – Is it time we desk jockeys made the switch to a standing desk? I wouldn't be too quick to rush into this form of working. Yes, it's not a good idea to spend 50 hours a week hunched over a desk, but your feet and the vascular system in your legs will not thank you in years to come for standing for that length of time each week. Maybe it's choice between avoiding a lardy arse now and varicose veins later…
  • Microsoft Mathematics 4.0 – Microsoft Mathematics provides a graphing calculator that plots in 2D and 3D, step-by-step equation solving, and useful tools to help students with math and science studies.
  • ScienceSeeker – ScienceSeeker collects posts from hundreds of science blogs around the world, so you can find the latest science news and discussion on any topic.
  • Biotechnology & Pharmaceuticals Magazines, White Papers, Reports, and eBooks – Launched today, the Chemspy chemical and pharma resources site. Those in the industry or academia qualify for free biotechnology & pharma magazines, so-called white papers, eBooks and reports.

Climate change and digital music

Information technology has a carbon footprint, that’s beyond doubt. Now, writing in a special issue of the Journal of Industrial Ecology, Christopher Weber, Jonathan Koomey and Scott Matthews in the US in work supported by grants from Microsoft Corporation and Intel Corporation have calculated that purchasing music digitally reduces the energy and carbon dioxide emissions associated with delivering music to customers by between 40% and 80% from the best-case physical CD delivery, depending on whether a customer then burns the files to CD (it’s five times better if they don’t). They point out that digital media services, such as subscription and streaming systems, like Spotify, last.fm and Pandora have higher energy usage than direct downloads, such as iTunes, Zune, amazon mp3 or any of myriad file sharing tools.

The team concedes that their calculations are very sensitive to both behavioural assumptions of how customers use digital music and several important parameters in the logistics chain of retail and e-tail delivery, such as customer transport to the store, CD packaging method, and final delivery to the customer’s home for e-tail.

“In particular,” they say, “online music’s superiority depends on the assumption that customers drive automobiles to the retail store.” Therein lies one of the biggest issues surrounding any carbon footprint calculations: the fact that it is relatively easy to overlook or overegg a specific factor depending on the stance one wishes to take.

Research Blogging IconWeber, C., Koomey, J., & Matthews, H. (2010). The Energy and Climate Change Implications of Different Music Delivery Methods Journal of Industrial Ecology, 14 (5), 754-769 DOI: 10.1111/j.1530-9290.2010.00269.x

Weber is at the Science and Technology Policy Institute in Washington, D.C. and Carnegie Mellon University. Koomey was visiting professor at Yale and is now at Lawrence Berkeley National Laboratory. Matthews is at Carnegie Mellon.

Genetically engineered heavy metal fans

The wastewater released from industry often contains high levels of toxic heavy metals, which can kill organisms, damage ecosystems, and accumulate in the foodchain. Electroplating, lead smelting, mining, and countless other processes produce enormous volumes of such wastewater.

In a perfect world, remediation would be powered by a renewable energy supply, there would be no solid waste to dispose of, and the heavy metal contaminants could be recycled back into the industrial process with minimal losses. That would be industrial Utopia, of course, but something close might exist if scientists can genetically modify aquatic plant species to grow quickly and soak up heavy metal ions from wastewater.

So-called phytoremediation technology has been used as an economical and eco-friendly option for treating wastewater for several years. It could have an even more significant impact on industry in the developing world, as genetic engineering programs mature.

“Phytoremediaton technologies involving the use of aquatic plants can be a better alternative to traditional/conventional technologies for treating wastewater in terms of low capital investment, minimum human power, less damage to environmental resources and limited energy consumption,” says Bhupinder Dhir of the Department of Environmental Biology, at the University of Delhi, India. He points out that the biosorption potential of aquatic plants should be more keenly explored for developing remediation methods.

Crucial to success is to grow wetland and other aquatic plants that produce a large biomass quickly even in highly toxic wastewater, but also express high levels of metal-sequestering proteins and other factors. For instance, over expression of the plant enzymes cystathionine gamma synthase and selenocysteine methyltransferase in aquatic plants could quickly soak up heavy metals. Species such as Spartina and Typha are already under investigation as transgenic wetland plants carrying Mer genes, which can absorb mercury from contaminated aquatic ecosystems.

However, all this work, still leaves one major problem: what to do with the contaminated plant biomass once the wastewater has been cleaned up?

“The decomposition of metal loaded plant biomass with passage of time raises an issue of major concern among the scientific community,” says Dhir. “Appropriate treatment of plant biomass retaining high levels of heavy metals before disposal is important to prevent further threat to the environment.” He suggests that post-harvest treatment is essential, perhaps involving composting and the associated reduction in volume.

Phytoremediation may eventually offer a leafy green possibility for cleaning up industrial wastewater even if we have not quite reached Utopia. However, there also has to be a way to retrieve the heavy metal leachate from this process. Incineration, pyrolysis, and biogas production are all being considered for the end products of phytoremediation. The technology will only become acceptable once a safe way to extract the heavy metals from the biomass and then safely dispose of the residue is found. And to be environmentally worthy that also has to be both energetically and economically viable.

Research Blogging Icon Bhupinder Dhir (2010). Use of aquatic plants in removing heavy metals from wastewater Int. J. Environmental Engineering, 2 (1/2/3), 185-201

A month with an electricity monitor

Right, the kettle is on for a morning brew and apparently our household is using 3.07 kilowatts. That will include the chest freezer in the garage, the refrigerator in the kitchen, the electric kettle, my laptop and wireless network, oh and a little device sitting on my desk right now that’s monitoring all those electrons as they speed through the mains supply cable.

electricity monitor

The monitor consists of two parts, a battery-powered broadcast unit that has a magnetic clamp that you wrap around the main electricity cable (no wiring necessarily) and a display that picks up the signal and tells you how many kW you’re using at any given time. It can also convert that into an equivalent of carbon tonnage, although that’s a more dubious metric given that the monitor doesn’t know how the electricity we’re using is made (renewables, fossils, whatever). You can also tap in your tariff and get it to tell you how much you’re spending.

When I first got the device, I ran around the house, switching lights and gadgets on and off just to see how much energy they were using (a lot, but not as much as the kettle!). Crucially, I also looked at what a difference it makes hard switching off TVs and PVRs compared to leaving them on standby (very little).

Now that the kettle has boiled and my wife has kindly furnished me with a steaming brew, the monitor tells me we’re currently (no pun intended) using approximately 1 kilowatt at a rough cost of 23 pence per hour and a carbon dioxide equivalent of 460 grams per hour.

Having just written about wind power elsewhere and how that costs about 5 cents per kilowatt hour I’m a little confused as to how my power supplier can be charging me ten times as much for the power as it costs to produce, but that’s capitalism for you…

Anyway, back to the monitor. We’ve been using it for about a month now and are averaging about 15 kWh per day (almost 6 kg of carbon dioxide per day), which is actually within the target I set us (for now) based on the average electricity consumption of a family of four. Of course, that average consumption assumes that both kids go out to school and that both parents go out to work, but we’re not an average family and probably spend quite a few more hours using electricity each day working in a home office than most people. So, I can feel ever so slightly smug.

10:10 campaign

However, I was also one of the first few to sign up for the 10:10 campaign, which means in 2010 we have to cut our energy consumption by 10% (at least) (gas and electricity!). So, I’m already replacing the last few of our incandescent lightbulbs with compact fluorescents and making sure that all our PCs are set to standby after a very short period of inactivity.

TVs and PVRs? Well, there’s little point in having a PVR if it’s not set to standby to record shows you want to see, but it could also be considered redundant because of BBC iPlayer and other channels signing up with Google to run full content on Youtube, so the PVRs might go soon. TVs can always be switched off fully without problems. Persuading the kids to switch off bedroom lights when they leave their rooms is a different matter…

Climate Change Action

It’s Blog Action Day 2009 and the subject this year is Climate Change. So, here are a few resources for readers seeking out climate information:

IPCC – Intergovernmental Panel on Climate Change – The IPCC assesses the scientific, technical and socio-economic information relevant for the understanding of the risk of human-induced climate change.

EPA – The US EPA Climate Change site provides comprehensive information on the issue of climate change and global warming in a way that is accessible and meaningful.

BBC Weather Centre – Aims to inform people about the potential changes in our weather over the next 100 years.

RealClimate – A commentary site on climate science by working climate scientists for the interested public and journalists.

Island of Doubt …the struggle between the power of rational discourse and the scientific method on one hand, and the forces of superstition and dogma on the other. But mostly about climate change.

Climate Feedback – Blog hosted by Nature Reports to facilitate lively and informative discussion on the science and wider implications of global warming.

  • An Ice Artist’s Poignant Plea to Halt Global Warming
  • Activists Sue Texas to Restrict Greenhouse Gases
  • Coral Bleaching Creates a Vicious Cycle of Further Bleaching and Disease
  • Big Business Gets Behind the Climate Bill
  • China: US is sabotaging Copenhagen climate treaty by ‘changing Kyoto rules’
  • World Briefing | Asia: Maldives: Bring the Waterproof Pens
  • Remember the ozone layer? It’s still there

Metal Bottle Tops and Landfill Mining

Reduce, re-use, and recycle. Just one of the countless mantras of the twenty-first century that we are told will save the planet. Of course, my grandmother used to put it far more succinctly and in a much more accessible form: waste not, want not.

Now, we have carbon footprints, emissions targets, and landfill directives, that are meant to govern what we should be doing in order to mitigate environmental devastation. Of course, we try to reduce our consumption and I encourage everyone to sign up to the 10:10 campaign or its local equivalent where you are.

If you can, get hold of, or borrow an energy meter that gives you a display of your electricity consumption and lets you home in on hidden waste, specifically those devices on standby that you should really switch off at the outlet. I’m even trying to convince the rest of my family, who should know better given grandma’s mantra, that we should be cutting down on waste and turning out lights, boiling only enough water, and avoiding car journeys when we can.

But, then I read about the trillions of plastic bags produced each year, the billions of drinks containers, and all those incandescent light bulbs that are suddenly redundant thanks to new laws aimed at reducing energy consumption and forcing us to switch to compact fluorescent tubes…are our miniscule efforts worth it in the face of such environmental threats?

What about metal bottle tops, every liver-defying beer we crack open, every tooth-rotting cola drunk, usually means a glass bottle and a bottle top? The glass is relatively easy to recycle, unless its brown or green, in which case it will most likely be crushed for hardcore for building roads. The crown cap is a mixed metal product usually with a polymer layer and paint, so not quite so easy to extract and recycle, at least until now. Currently, the recycling processes for metal bottle tops work through millions of tonnes but are inefficient, wasting energy and losing a large amount of the metal. Moreover milling and grinding affect the metal morphology in a detrimental manner making further processing of the material into a useful form difficult.

Mahmoud Rabah of the Chemical and Electrochemical Laboratory, at the Central Metallurgical R&D Institute (CMRDI), in Cairo, Egypt, and his colleagues are working towards a method for recycling metal bottle tops that could take this huge problem out of the waste equation and provide a source of recycled aluminium.

Rabah explains that standard magnetic extraction allows iron tops to be separated from aluminium tops and once melted with a flux material (sodium borate-sodium chloride mixture), other impurities can be scraped off by flotation techniques, the team explains, and hydrochloric acid leeches out the aluminium. Paint breaks down to titanium dioxide on heating at 750 Celsius for just half an hour. The team then found that they could create standard aluminium alloy by addition of a primary master alloy and so recover almost all (96.8%) of the aluminium from a bottle top waste stream. Sounds like a plan to me, but…

…there always remains the problem of balancing the energy books. The extracted aluminium alloy is valuable, certainly. Recycling aluminium from the cans themselves as opposed to bottle tops uses about 5% of the energy needed to extract virgin aluminium from bauxite, the mined aluminium ore. But, recycling aluminium bottle tops may not be quite so energy efficient and further studies are now needed to discover whether it will not only be commercially viable but whether the extraction is environmentally sensible. There may be some other less energy-intensive way to reuse waste bottle tops, after all.

I asked Rabah about the issues and he told me that discussions have been started with the three foreign companies working in Egypt that collect, sort and sell household waste in the greater Cairo region. One of the first problems they face is how to sort the 18-tonne sample batches because facilities do not yet exist to carry out this critical task. Manual separation has been suggested but that is practically very tedious and labour intensive.

However, with grandma’s mantra in mind, finding a way to make the endless stream of waste bottle tops, and those already in landfills across the globe, a viable source of metal should be found. Think about it, landfills packed with metals, plastics and other commodity materials, albeit in impure and mixed forms, could become the mines of the future once extraction techniques are made economically and energetically viable.

Research Blogging IconMahmoud A. Rabah (2009). Recovery of aluminium alloys and some valuable salts from spent bottle covers Int. J. Environment and Waste Management, 5 (1/2), 194-210

Biofuels vs Fossil Fuels

Biofuels are not much better than fossil fuels in terms of the impact on atmospheric pollution levels and effects on climate change, according to Mark Jacobson professor of civil and environmental engineering at Stanford University. This is especially true when making claims about the sustainability of biofuels in comparison with hydrogen fuel cells and battery-driven electric vehicles charged up using solar, wind, tidal or other truly renewable energy sources.

To quote from his web page, the main goal of Jacobson’s research is to…

…understand physical, chemical, and dynamical processes in the atmosphere better in order to address atmospheric problems, such as climate change and urban air pollution, with improved scientific insight and more accurate predictive tools. He also evaluates the atmospheric effects of proposed solutions to climate change and air pollution, examines resource availability of renewable energies, and studies optimal methods of combining renewables.

In order to accomplish these important goals Jacobson has developed and applied various models to simulate gas, aerosol, cloud, radiative, and land/ocean-surface processes that could give scientists and engineers a much more overarching perspective on the climate than other simpler models.

Jacobson points out that the use of biofuels, particularly ethanol, has expanded in the last few years, although in South America biofuels have been popular and successful for decades. This more recent and rapid expansion of biofuel use in transport across North America and elsewhere is based on the notion that by replacing fossil fuels with biofuels we may somehow ameliorate global warming and air pollution. After all, he growing plants absorb carbon dioxide from the atmosphere, they are then converted into biofuels, which are burned in modified vehicle internal combustion engines, which releases the carbon dioxide into the atmosphere again, where it is used by the next generation of biofuel crop plants to grow and so on.

This claim is still being hotly debated, especially given the impact on agriculture and the environment of turning over vast tracts of land to biofuel crops rather than growing food. However, Jacobson believes that, “the real comparison should be between biofuels and other emerging technologies.” He reports that corn-E85 (85% ethanol/15% gasoline) and cellulosic-E85 both degrade air quality and climate by up to two orders of magnitude more than electric vehicles ultimately powered by solar photovoltaic cells, wind, geothermal, hydroelectric, wave, or tidal power. “As such, the use of cellulosic or corn ethanol at the expense of the other options will cause certain damage to health, climate, land, and water supply in the future,” he asserts.

Moreover, the land required for cellulosic-E85 may also exceed that of corn-E85 and the land required for both will exceed that required for the footprint on the ground of wind powering battery electric vehicles by a factor of 500,000 to 1 million, adds Jacobson. He suggests that we should be considering very carefully the notion that replacing fossil fuels with biofuels could save us from catastrophic climate change given that this is not only unlikely, but will also have a negative impact on land and water supply relative to genuinely renewable energy sources.

I asked Jacobson for his thoughts on how vested interests might be persuaded that biofuels are no panacea. “The biofuels interests will go out of their way to dismiss or distort results from any study that comes out that makes their product look bad,” he told me. “It is mostly politicians and the public who can be persuaded,” he added. “The best approach is to focus on what is better, such as electric hydrogen fuel-cell vehicles powered by renewables, and to try to push people more in that direction.”

Research Blogging Icon Mark Z. Jacobson (2009). Effects of biofuels vs. other new vehicle technologies on air pollution, global warming, land use and water International Journal of Biotechnology, 11 (1/2), 14-59

Alchemist Checks Oxy Cholesterol Levels

copper-alchemistThe Alchemist this week learns how fluorine chemistry is blooming, how to melt proteins, and how cholesterol is all about the good, the bad, and the oxy. Also this week, a technique borrowed from organic LED fabrication could lead to a new way to manufacture tiny inorganic LEDs for next generation displays, while a conductive flip has been observed with clusters of atoms close to absolute zero. Finally, the American Chemical Society announces this years previously unsung chemical heroes from across the industry.

Previously on ChemWeb, we heard rumors of silicon neurons and the coming cyborg age, he discovers that a compound that leads to ovine Cyclops has now been synthesized for cancer drug research, and how chicken poop down on the shooting range could help solve the problem of lead in the soil. Also, in the news, a new type of fuel cell for truckers that reduces their emissions during rest periods and the increasing cost in water of producing bioethanol. Finally, a major award for a generic pharmacologist.

Spinning Facebook and Student Grades

A while back The Sunday Times got wind of a poster to be presented at a meeting by a researcher from Ohio State University. OSU posted an embargoed press release to Eurekalert and Newswise, but the Sunday Times, apparently never received that press release. Regardless, the paper put together a story with an incredible spin that ran on the Sunday before the meeting. The research poster was about Facebook and student diligence, you may have seen it in the news…

All hell broke loose as one after another a new sensationalist article about the research blamed Facebook for declining student grades and failed exams across the board. It seems that many outlets simply modified the original Sunday Times piece, which gave those stories a double spin. It caused outrage at OSU and in the media.

OSU’s assistant VP for Research Communications, Earle Holland, discussed the debacle in the summer issue of ScienceWriters, the NASW’s member magazine and slated the media for sensationalising and for mistaking correlation and causation in the runaway coverage that ensued.

Holland says in his article that the press release described only a small pilot study that looked at Facebook use among students and simply asked them about how much studying they did, and their grades. He adds that “it looked for any correlation between Facebook use and GPAs [grades], but suggested no causation.” Moreover, the study looked at a very small sample of students. It didn’t prove what the media headlines had suggested.

According to a report in the Columbia Journalism Review: “The entire episode offers a good lesson in the inherent risks of reporters’ cavalierly covering the social sciences, as well as the risks that young researchers can face in dealing with the news media.” The comments following that page are quite intriguing too.

I originally started this post with the intention of taking an opposing view. After all, surely any news is better than no news? But, before I sent the post to the blog queue, I emailed Earle to ask for his side of the story directly and he told me that, “our attention is focused on more than trying to sneak ways to get news coverage. We get tons of coverage and, as the largest research university in the US, don’t have to think up ways to finagle exposure.”

He added that, “We report on research emerging from most of the more than 100 academic departments on campus comprising more than 4,000 investigators and we’re highly selective about which projects we cover. First and foremost, they have to have undergone some peer review – in this case, publication in a reputable journal or selection for presentation at a major national meeting. Secondly, the research has to be both translateable and be interesting to a general reader/viewer/listener. Both criteria have to be met for us to do a story.”

That’s a fair and solid response and dispels the concerns I raised in my draft post written on a whim. It seems that the initial spin by the Sunday Times story which did not report the actual preliminary results in the original research poster got totally out of hand as these rather topical subjects – Facebook and student grades – collided.

And, before you ask, no, there were no threats to send around the Ohio heavies. However, given that OSU is the biggest research university in the States, I guess they could have done just that and the subsequent story and Youtube clip of my physical demise would have been even bigger than a small research project blown out of all proportion in the name of churnalism.