Clams on Prozac

The sex connection with oysters (I don’t mean sex with them, obviously, but that they’re supposed to be an aphrodisiac) is obvious but what about clams on Prozac?

A US biologist claimed to have discovered that the anti-depressant can help improve the sex lives of shellfish. According to Peter Fong of Gettysberg College he found that the drug stimulates freshwater fingernail clams and zebra mussels to spawn, which could be useful for clam and mussel farmers. A clue as to why lies in the effects of Prozac on raising serotonin levels – the compound not only affects human mental happiness but is the trigger for spawning in these creatures.

Fong added mysteriously that rarely has either animal been observed to spawn in the wild or in the laboratory without the use of an artificial chemical aid. I was puzzled then as to how these aquatic creatures managed to reproduce successfully for millions of years before the invention of Prozac.

Guilty privates

There’s an army barracks attached to a local village that allows the public to use its heated outdoor swimming pool in the summer. I often assumed it was too much chlorine that was the problem with stinging eyes.

But, according to chemist Howard Gosling that typical swimming pool smell actually comes from compounds known as chloramines that form when chlorine reacts with any urine or sweat in the water. Nice. It’s the chloramines not the chlorine that make your eyes sting.

I’ll leave you to draw your own conclusions about why the army pool brings tears to the eyes. Maybe the CO should drop in some of that chemical that turns the water blue of there are any guilty privates swimming.

Illicit CD-ROMs

An Australian chemist friend of mine was giving a lecture recently on how Western chemists might best help their colleagues in the developing world gain access to the mountains of chemical information available without eating into their own budgets too much.

Various systems based around the Web were discussed but industrial delegates were surprisingly more than a little interested in one particular idea concerning CD-ROMs.

My chemist friend planned to set up a cheap subscription service for a monthly CD-ROM that would mirror chemistry sites on the web and so bring the internet to those scientists in poverty-struck institutes with no access. When the queue for samples of the CD-ROM had stretched to the back of the lecture hall my friend asked the next person in line why they were so keen to see the CD-ROM. The startling reply was that their employer was so scared of staff wasting time on the web that all net access was blocked – a CD-ROM could be viewed illicitly without needing a net connection.

Where there’s muck, there’s brass

Where’s there’s muck there truly is brass according to the late Benjamin Luberoff writing in Chemistry & Industry. Luberoff reported that in Sacramento, California, someone is stealing the trash. Not just any old rubbish, mind, the stuff that’s getting the attention of the local criminal fraternity, or sorority, is the tonnes of recyclables residents kindly sort and leave out for collection every week.

It’s easy to load a pickup truck with aluminium Coors cans, paper and glass, drive to the local recycling plant and pick up a few nickels and dimes in return for one’s efforts, he reckons. The local police department estimates that some $400,000 worth of recyclables are being scavenged from among the garbage of the citizenry each year.

A sizeable loss to the city coffers to add to the $250,000 they spend on disposal of old fridges and tyres. I’m waiting with interest to see the same happening in Cambridge where a kerb-side recycling scheme was implemented last year. If it’s good enough for California.

Stick with grubby bedsheets

My Dad is a retired civil engineer and unfortunately for him recently suffered a severe and itchy allergic rash on his legs caused by exposure to a biological washing powder.

After trying a topical antihistamine cream Dad went to his GP who prescribed antibiotics then, as a last resort, a steroid cream known as Betnovate-C.

According to the information leaflet accompanying the tube of cream it ‘may stain hair, skin, or fabric’. So, what’s it doing to your skin, my Dad wondered.

That aside, after a successful treatment, he was a bit puzzled as to how wash out a particularly stubborn mark on the bedsheets. His mind was put at rest by the instructions on the cream’s leaflet – ‘stains may be removed with a biological washing powder,’ it said.

Of course.

Elemental Discoveries

Elemental Discoveries was first published as a spread of chemistry news items written by David Bradley in the mid-1990s for the young chemists magazine New Elements (the name for which, incidentally, DB came up with). In 1996, he began hosting it on the web and by 1999 that proto-blog had morphed into the Sciencebase site, which ultimately became the Sciencebase Science Blog.

If you follow through the Sciencebase archives you may notice gaps, there are legacy pages that are not part of the main content management system (CMS), unfortunately, and so old, and perhaps out of date now, that it would be pointless to fold them into the CMS.

Issue 49

The visible way

The efficient conversion of sunlight to chemical energy has generally been the preserve of photosynthesising life. Until now.

Stellar system stifles landfill stench

Anyone living near a landfill will be familiar with the awful smell of decomposing waste. But, those nasty niffs could soon be history, thanks to British researchers who are tearing the odour molecules apart with a plasma.

A closed view of life

In the growing field of research into biospheres, scientists hope to improve their understanding of what sustains life and so improve our chances of colonising space and even saving the earth from environmental disaster.

Science news site Sciencebase

X-rays Make Smoother Chocolate

Chocolate

For manufacturers of drugs and chocolate bars, an understanding of how they crystallise can mean the difference between a best-selling product and a flop. X-ray diffraction could help them get a clearer picture at the atomic level.

The taste and feel of chocolate in the mouth depends a lot on the crystal form of the cocoa solids, while some medicines work more effectively in one polymorphic form than another. Until now a crystal clear understanding at the atomic level of how different polymorphs form in everything from chocolate to medicine has been little more than trial and error except in the laboratory setting of the vacuum. Now, Elias Vlieg of the Department of Solid State Chemistry, at the University of Nijmegen, describes how X-ray diffraction (XRD) techniques can be used to study crystals as they form and so provide clues as to how their growth can be better controlled. The chance of tastier chocolate and more efficacious drugs is on the horizon.

If the growth of crystals were clear-cut, there would be no need to study crystal growth, but many compounds can crystallise in different – polymorphic – forms. Even a material as seemingly simple as carbon has several polymorphs – graphite, diamond and fullerite. The differences between polymorphs of the same compound can be tiny, an atom shifted slightly to the left, or a tighter angle between two bonds. But, they can also be quite large differences that impact on the overall properties of the solid. For a drug in solid form this can have a real impact on how well it is absorbed by the body. One polymorph may take longer to be dissolved and absorbed while another might be faster acting. The result can also alter the drug’s side-effects. A slowly absorbed drug might sit in the stomach too long and cause irritation of the lining of the stomach for instance.

On the lighter side, the minute crystals of cocoa solids in a chocolate bar affect how the bar melts in the mouth. One crystal form may have a more pleasing texture on the tongue than another. According to Vlieg, XRD has been wholly successful in observing crystal growth in a vacuum. But for crystal growth from the more industrially realistic setting of a solution, melt or solid, it has until recently been little more than a dream tool.

Now, XRD is beginning to offer information on the structure of both sides of a growing interface. This, explains Vlieg, means that structural details like relaxation and reconstruction on the crystal surface and ordering in the solution can be included in the theoretical description of crystal growth.

Understanding crystal growth in vacuum and beyond, Surface Science, in press.

Carpet Consumers

Trust a scientist to take consumer rights to the extreme. Analytical chemist Gerry Clark bought a new carpet for his son’s bedroom. The carpet had that common ‘new carpet’ smell but after several weeks it still hadn’t dissipated and Clark began to worry about the fumes to which his child was being exposed.

He took a chunk of the carpet into his lab and recorded a gas chromatograph (GC) for the volatile emissions. Sure enough, there were spikes due to several organic compounds. Clark took the test sample back to the shop together with his GC results, complained, and insisted the sample be sent to the manufacturer.

A week later, the company was in touch offering a replacement because the original carpet had obviously not been left to dry long enough before dispatch to the outlet. Needless to say everything smells rosy now.

Such tales are all very well for lab chemists, but what about the rest of us fobbed off with fusty floor coverings, smelly sofas, and pungent pouffes? Maybe consumers should set up an action group with its own labs to help people make a scientific case for complaints. It could be called the Prevention of Odourous New Gear Society. Or STENCH, STINK, REEK…or whatever.

Sperm tap

Richard Evans, Catrin Pritchard and their colleagues at GlaxoWellcome discovered a way of blocking the path of sperm from the testes, which could produce semen that is virtually sperm free without the need for an irreversible vasectomy.

On the other hand, as it were, the control they have discovered could also be used to enhance the movement of sperm from the testes and so may have potential in male fertility treatment too.

I often wonder with these fertility researcher people whether they do their research manually…maybe not. For more on male fertility research check out the sperm tap article over on Reactive Reports.

Adverse Drug Reactions

A statue of Asclepius. The Glypotek, Copenhagen.The Wall Street Journal reports (Jan 2, 2009) that a new collaboration between pharmaceuticals giant Pfizer and two Boston hospitals will test whether computerized patient records can boost reporting of adverse drug reactions (ADRs) making it a routine part of filling out electronic patient charts.

Some time ago (Catalyst column, ChemWeb.com, June 1998), I discussed the implications of the more than 100,000 deaths in the US each year allegedly caused by patients’ reactions to their medication – three times the number killed in car accidents. So-called adverse drug reactions (ADRs) are, estimated to be the fourth biggest killer in the US after heart disease, cancer and stroke. Recently, there has been an upsurge of interest in ADRs and calls in the US for an independent body to be established to make control of drugs once they have passed though the regulatory process easier and save lives.

That 100,000 is just a statistic of course, except for those patients and their loved ones affected. Every drug has side-effects and although they do not exist through malicious design, one can perhaps see that the drug R&D process is not perfect.

A pharmaceutical company for reasons of economics and politics cannot possibly study the effects of every putative drug on every ‘type’ of individual in the different circumstances in which it might be used. This is where medication monitoring services come in handy. Pharmacogenomics and personalised medicine that focus on each patient’s single nucleotide polymorphisms (SNPs) may remedy this. But, despite the emergence of inexpensive genomics and predictions of the $1000 genome, this is still true when it comes to administering to the elderly and children as they can be more sensitive than the proverbial adult. Moreover, in the supposedly clinically correct environment of the hospital there are likely to be even more exacerbating factors at work for each individual patient than there might be for a patient with a straightforward bacterial infection, say.

An individual’s genome may be at the root of a particular type of adverse drug reaction. As Catalyst discussed early in 1998. Ten percent of Caucasians and about two percent of Chinese people cannot metabolise the analgesic (painkiller) codeine into its active form, morphine. The drug therefore simply does not ‘work’ for them. The problem boils down to those patients lacking the gene for the liver enzyme CYP2D6 responsible for the conversion. This particular effect was discovered by Alastair Wood a clinical pharmacologist at Vanderbilt University in Nashville, Tennessee. The drug having no apparent effect might lead the GP to prescribe a higher, perhaps intolerable dose. For a Chinese person lacking CYP2D6 the result can be severe nausea.

CYP2D6 metabolises a variety of drugs in addition to codeine, for instance, the antihypertensive propranolol (Inderal), propafenone (Rythmol), for heart arrhythmia, and many of the tricyclic antidepressants. In these cases though people lacking CYP2D6 actually experience an exaggerated effect as the active form stays in their system longer.

In the hospital environment, muscle relaxants used in anaesthesia can be a particular problem for some patients, because they have a faulty gene for the enzyme, butyrylcholinesterase, that would naturally metabolise that drug. For example, succinylcholine stops patients breathing during surgery, this is fine while mechanical ventilation is continued but for some patients the apnoea does not cease and they can die. Peculiar peak concentrations of the TB drug isoniazid have been seen with some patients and have been correlated with a faulty N-acetyltransferase.

In fact, there are many, many variations in drug response that have been recognised and the pharmaceutical companies are becoming well aware of the potential for profit these variations might bring if they can develop drugs tailored to an individual’s genome. The National Institutes of Health in the US has also recognised the potential for improving medicine and is in the process of establishing a Pharmacogenetic Polymorphic Variants Resource database for genes encoding proteins that determine variations in drug responses.

Pharmacogenomics ties in closely with the reporting of adverse drug reactions, although not all ADRs are due to genes. The anti-obesity drugs dexfenfluramine and fenfluramine which are often taken in combination with phentermine – as fen/phen – caused serious ADRs in the form of major heart valve problems in 31% of patients taking the combined medication. The eventual withdrawal of the drug once the problem was widely recognised and publicly known was swift but fenfluramine had been on the market 24 years.

However, while the voluntary reporting of ADRs is fairly common within the medical profession their existence is not well known. Indeed, aside from mentioning a few cursory side effects doctors are often unaware of potentially serious reactions to particular drugs and this is compounded by the fact that all this reporting of ADRs is purely voluntary with the onus on the pharmaceutical companies. As such, there are many people unfairly affected by these drugs and there are actions against pharmaceutical companies like the lawsuit against Levaquin, Actos, etc. It took twelve years before the antihistamine drug used by countless hayfever sufferers every summer was withdrawn in preference to its safer metabolite. The major ADR of terfenadine is potentially fatal heart arrhythmia especially in users taking certain antibiotics at the same time.

A group of medical scientists led by Alastair Wood, published a paper in the New England Journal of Medicine (1998, 339, 1851) calling for an independent drug safety board to be established to keep tabs on ADRs. This body would be there to help protect patients as well as ensuring that medical practitioners were made fully aware of the putative hazards of the countless drugs they prescribe.

According to Wood and his colleagues, ADRs are a serious cause of patient morbidity and mortality. They make the point that there have been independent bodies in place to investigate the likes of plane crashes, train and major traffic incidents, chemical and radiation accidents for many years. These bodies can make recommendations to prevent similar serious episodes happening again following an accident. But, there is no organisation with responsibility for monitoring ADRs and to ensure proposals put forward following an investigation are taken on board.

The ad hoc approach to reporting of ADRs and reactions to drug products seems at odds with the fact that we have Internet and information technology available. Wood and his colleagues say that for all this technology it is remarkable that little use is made of it for drug surveillance to help avoid the huge numbers of deaths that occur. The likes of terfenadine and phen-fen which do end up being withdrawn by the FDA are few and far between and the evidence on which the decision is based while strong is not often in the form of formal statistical analysis. One of the problems is that the US Food and Drug Administration (FDA) does not have the resources to carry this out nor is it in the interests of the pharmaceutical marketers to gather such data.

Wood and his colleagues believe that the solution to the problem is to make this surveillance obligatory through the creation of a body independent of the agency that carries out drug approvals – the FDA. A second, independent body would help avoid conflicts of interest, in that the FDA would not have to investigate problems with drugs it had approved! In their paper in the NEJM the authors state,

We must expect that predicted and unpredicted adverse events from drugs will continue to occur. If we accept that the true safety profile of a new drug is dependent on the experiment that necessarily follows the drug’s release into the marketplace, then we must fund and implement mechanisms to ensure that the experiment is properly monitored, the data appropriately analysed, and the conclusions disseminated rapidly.

Clinical trials can involve a few thousand people, once approved, millions may take it soon after especially now that TV marketing is available in the US to the companies.

Not all ADRs are lethal, just adverse, and some are simply unavoidable because of the individual circumstances in which a drug is administered. They may be unpredictable and unavoidable in some cases but once an ADR occurs the medical community should be made aware of the risks as soon as possible so that better judgements about prescribing a drug can be made and ADRs pushed right down that list of causes of death.

This original version of this article appeared in my Catalyst column in ChemWeb’s The Alchemist in March 1999 before Vioxx, pre TGN1412, and only the intro has been updated January 2009.